| The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ... Nucleic acids research 48 (D1), D1145-D1152, 2020 | 649 | 2020 |
| The ProteomeXchange consortium at 10 years: 2023 update EW Deutsch, N Bandeira, Y Perez-Riverol, V Sharma, JJ Carver, ... Nucleic acids research 51 (D1), D1539-D1548, 2023 | 199 | 2023 |
| Assembling the community-scale discoverable human proteome M Wang, J Wang, J Carver, BS Pullman, SW Cha, N Bandeira Cell systems 7 (4), 412-421. e5, 2018 | 159 | 2018 |
| Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS) Y Yang, R Sebra, BS Pullman, W Qiao, I Peter, RJ Desnick, CR Geyer, ... BMC genomics 16, 1-11, 2015 | 81 | 2015 |
| MassIVE. quant: a community resource of quantitative mass spectrometry–based proteomics datasets M Choi, J Carver, C Chiva, M Tzouros, T Huang, TH Tsai, B Pullman, ... Nature methods 17 (10), 981-984, 2020 | 65 | 2020 |
| Universal Spectrum Identifier for mass spectra EW Deutsch, Y Perez-Riverol, J Carver, S Kawano, L Mendoza, ... Nature methods 18 (7), 768-770, 2021 | 52 | 2021 |
| GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser D Petras, VV Phelan, D Acharya, AE Allen, AT Aron, N Bandeira, ... Nature methods 19 (2), 134-136, 2022 | 40 | 2022 |
| microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data S Zuffa, R Schmid, A Bauermeister, PW P. Gomes, ... Nature Microbiology, 1-10, 2024 | 19 | 2024 |
| Proteomics Standards Initiative’s ProForma 2.0: Unifying the encoding of proteoforms and peptidoforms RD LeDuc, EW Deutsch, PA Binz, RT Fellers, AJ Cesnik, JA Klein, ... Journal of proteome research 21 (4), 1189-1195, 2022 | 15 | 2022 |
| ProteinExplorer: a repository-scale resource for exploration of protein detection in public mass spectrometry data sets BS Pullman, J Wertz, J Carver, N Bandeira Journal of proteome research 17 (12), 4227-4234, 2018 | 13 | 2018 |
| The CYP2D6 VCF Translator W Qiao, J Wang, BS Pullman, R Chen, Y Yang, SA Scott The pharmacogenomics journal 17 (4), 301-303, 2017 | 12 | 2017 |
| Index-based, high-dimensional, cosine threshold querying with optimality guarantees Y Li, J Wang, B Pullman, N Bandeira, Y Papakonstantinou Theory of Computing Systems 65 (1), 42-83, 2021 | 10 | 2021 |
| GNPS Dashboard: collaborative analysis of mass spectrometry data in the web browser D Petras, VV Phelan, D Acharya, AE Allen, AT Aron, N Bandeira, ... Biorxiv, 2021.04. 05.438475, 2021 | 6 | 2021 |
| P-massive: a real-time search engine for a multi-terabyte mass spectrometry database N Batsoyol, B Pullman, M Wang, N Bandeira, S Swanson SC22: International Conference for High Performance Computing, Networking …, 2022 | 2 | 2022 |
| USI: a universal spectrum identifier for mass spectrometry EW Deutsch, JA Vizcaíno, Y Perez-Riverol, J Carver, PA Binz, B Pullman, ... PSI Recommendation, 1-17, 2021 | 1 | 2021 |
| What can be learned from Repository-Scale Public Mass Spectrometry Data? B Pullman UC San Diego, 2022 | | 2022 |
| Proteomics Standards Initiatives ProForma 2.0 Unifying the encoding of Proteoforms and Peptidoforms RD LeDuc, EW Deutsch, PA Binz, RT Fellers, AJ Cesnik, JA Klein, ... arXiv preprint arXiv:2109.11352, 2021 | | 2021 |
| ProForma (Proteoform and Peptidoform Notation) PSI Recommendation, JA Vizcaíno, EW Deutsch, RT Fellers, AJ Cesnik, ... | | 2020 |
| Curating Community Spectral Libraries Using a Recommender System N Koulouris, B Pullman | | |
