| A draft sequence of the Neandertal genome RE Green, J Krause, AW Briggs, T Maricic, U Stenzel, M Kircher, ... science 328 (5979), 710-722, 2010 | 3075 | 2010 |
| A metagenome-wide association study of gut microbiota in type 2 diabetes J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ... Nature 490 (7418), 55, 2012 | 3002 | 2012 |
| Bayesian inference of phylogeny and its impact on evolutionary biology JP Huelsenbeck, F Ronquist, R Nielsen, JP Bollback science 294 (5550), 2310-2314, 2001 | 2625 | 2001 |
| Codon-substitution models for heterogeneous selection pressure at amino acid sites Z Yang, R Nielsen, N Goldman, AMK Pedersen Genetics 155 (1), 431-449, 2000 | 2253 | 2000 |
| Evolution of genes and genomes on the Drosophila phylogeny Drosophila 12 Genomes Consortium Nature 450 (7167), 203, 2007 | 1807 | 2007 |
| Bayes empirical Bayes inference of amino acid sites under positive selection Z Yang, WSW Wong, R Nielsen Molecular biology and evolution 22 (4), 1107-1118, 2005 | 1757 | 2005 |
| Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene R Nielsen, Z Yang Genetics 148 (3), 929-936, 1998 | 1619 | 1998 |
| Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis J Hey, R Nielsen Genetics 167 (2), 747-760, 2004 | 1415 | 2004 |
| Distinguishing migration from isolation: a Markov chain Monte Carlo approach R Nielsen, J Wakeley Genetics 158 (2), 885-896, 2001 | 1352 | 2001 |
| Molecular signatures of natural selection R Nielsen Annu. Rev. Genet. 39, 197-218, 2005 | 1350 | 2005 |
| Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level J Zhang, R Nielsen, Z Yang Molecular biology and evolution 22 (12), 2472-2479, 2005 | 1350 | 2005 |
| Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models Z Yang, R Nielsen Molecular biology and evolution 17 (1), 32-43, 2000 | 1341 | 2000 |
| Genotype and SNP calling from next-generation sequencing data R Nielsen, JS Paul, A Albrechtsen, YS Song Nature Reviews Genetics 12 (6), 443, 2011 | 1134 | 2011 |
| Evolutionary and biomedical insights from the rhesus macaque genome RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ... Science 316 (5822), 222-234, 2007 | 1133 | 2007 |
| Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages Z Yang, R Nielsen Molecular biology and evolution 19 (6), 908-917, 2002 | 1127 | 2002 |
| The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311, 2010 | 1040 | 2010 |
| Sequencing of 50 human exomes reveals adaptation to high altitude X Yi, Y Liang, E Huerta-Sanchez, X Jin, ZXP Cuo, JE Pool, X Xu, H Jiang, ... Science 329 (5987), 75-78, 2010 | 1027 | 2010 |
| The diploid genome sequence of an Asian individual J Wang, W Wang, R Li, Y Li, G Tian, L Goodman, W Fan, J Zhang, J Li, ... Nature 456 (7218), 60, 2008 | 1027 | 2008 |
| Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics J Hey, R Nielsen Proceedings of the National Academy of Sciences 104 (8), 2785-2790, 2007 | 964 | 2007 |
| A scan for positively selected genes in the genomes of humans and chimpanzees R Nielsen, C Bustamante, AG Clark, S Glanowski, TB Sackton, MJ Hubisz, ... PLoS biology 3 (6), e170, 2005 | 885 | 2005 |
Carlos D. BustamanteStanford UniversityVerified email at stanford.edu
