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Yue Cao
Yue Cao
Department of Electrical and Computer Engineering, Texas A&M University
Verified email at tamu.edu
Title
Cited by
Cited by
Year
Homophilic CD44 interactions mediate tumor cell aggregation and polyclonal metastasis in patient-derived breast cancer models
X Liu, R Taftaf, M Kawaguchi, YF Chang, W Chen, D Entenberg, Y Zhang, ...
Cancer discovery 9 (1), 96-113, 2019
2982019
ICAM1 initiates CTC cluster formation and trans-endothelial migration in lung metastasis of breast cancer
R Taftaf, X Liu, S Singh, Y Jia, NK Dashzeveg, AD Hoffmann, ...
Nature communications 12 (1), 4867, 2021
1212021
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
De novo protein design for novel folds using guided conditional wasserstein generative adversarial networks
M Karimi, S Zhu, Y Cao, Y Shen
Journal of chemical information and modeling 60 (12), 5667-5681, 2020
822020
TALE: Transformer-based protein function Annotation with joint sequence–Label Embedding
Y Cao, Y Shen
Bioinformatics 37 (18), 2825-2833, 2021
612021
Learning to optimize in swarms
Y Cao, T Chen, Z Wang, Y Shen
Advances in neural information processing systems 32, 2019
552019
Energy‐based graph convolutional networks for scoring protein docking models
Y Cao, Y Shen
Proteins: Structure, Function, and Bioinformatics 88 (8), 1091-1099, 2020
482020
Extracellular Domains I and II of cell-surface glycoprotein CD44 mediate its trans-homophilic dimerization and tumor cluster aggregation
M Kawaguchi, N Dashzeveg, Y Cao, Y Jia, X Liu, Y Shen, H Liu
Journal of Biological Chemistry 295 (9), 2640-2649, 2020
292020
Fold2Seq: A joint sequence (1D)-Fold (3D) embedding-based generative model for protein design
Y Cao, P Das, V Chenthamarakshan, PY Chen, I Melnyk, Y Shen
International Conference on Machine Learning, 1261-1271, 2021
252021
Bayesian active learning for optimization and uncertainty quantification in protein docking
Y Cao, Y Shen
Journal of chemical theory and computation 16 (8), 5334-5347, 2020
242020
Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants
MS Cline, G Babbi, S Bonache, Y Cao, R Casadio, X de la Cruz, O Díez, ...
Human Mutation 40 (9), 1546-1556, 2019
192019
Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer
A Voskanian, P Katsonis, O Lichtarge, V Pejaver, P Radivojac, ...
Human mutation 40 (9), 1612-1622, 2019
122019
Machine learning-assisted elucidation of CD81–CD44 interactions in promoting cancer stemness and extracellular vesicle integrity
EK Ramos, CF Tsai, Y Jia, Y Cao, M Manu, R Taftaf, AD Hoffmann, ...
Elife 11, e82669, 2022
112022
Predicting pathogenicity of missense variants with weakly supervised regression
Y Cao, Y Sun, M Karimi, H Chen, O Moronfoye, Y Shen
Human mutation 40 (9), 1579-1592, 2019
102019
De novo protein design for novel folds using guided conditional wasserstein generative adversarial networks (gcwgan). bioRxiv
M Karimi, S Zhu, Y Cao, Y Shen
52019
Bayesian modeling and uncertainty quantification for learning to optimize: What, why, and how
Y You, Y Cao, T Chen, Z Wang, Y Shen
International Conference on Learning Representations, 2022
22022
CD81 partners with CD44 in promoting exosome biogenesis, tumor cluster formation, and lung metastasis in triple negative breast cancer
EK Ramos, CF Tsai, NK Dashzeveg, Y Jia, Y Cao, M Manu, R Taftaf, ...
bioRxiv, 2022.02. 23.481674, 2022
2022
Bayesian Learning to Optimize: Quantifying the Optimizer Uncertainty
Y Cao, T Chen, Z Wang, Y Shen
2020
Single cell RNA sequencing-based identification of molecular drivers in circulating tumor cell cluster formation and lung metastasis
R Taftaf, X Liu, S Singh, Y Jia, D Scholten, Y Zhang, A Davis, C Reduzzi, ...
Cancer Research 80 (16_Supplement), 2603-2603, 2020
2020
Supporting Information TALE: Transformer-based protein function Annotation through joint sequence-Label Embedding
Y Cao, Y Shen
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Articles 1–20