| MAGUS+ eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences C Shen, P Zaharias, T Warnow Bioinformatics 38 (4), 918-924, 2022 | 15 | 2022 |
| WITCH: improved multiple sequence alignment through weighted consensus hidden Markov model alignment C Shen, M Park, T Warnow Journal of Computational Biology 29 (8), 782-801, 2022 | 12 | 2022 |
| UPP2: fast and accurate alignment of datasets with fragmentary sequences M Park, S Ivanovic, G Chu, C Shen, T Warnow Bioinformatics 39 (1), btad007, 2023 | 5 | 2023 |
| UPP2: Fast and Accurate Alignment Estimation of Datasets with Fragmentary Sequences M Park, S Ivanovic, G Chu, C Shen, T Warnow bioRxiv, 2022.02. 26.482099, 2022 | 5 | 2022 |
| BATCH-SCAMPP: Scaling phylogenetic placement methods to place many sequences E Wedell, C Shen, T Warnow bioRxiv, 2022.10. 26.513936, 2022 | 1 | 2022 |
| eMAFFTadd: scaling MAFFT-linsi-add to large datasets C Shen, B Liu, T Warnow bioRxiv, 2022.05. 23.493139, 2022 | 1 | 2022 |
| EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment C Shen, B Liu, KP Williams, T Warnow Algorithms for Molecular Biology 18 (1), 21, 2023 | | 2023 |
| Large scale sequence alignment via efficient inference in generative models M Mongia, C Shen, AG Davoodi, G Marçais, H Mohimani Scientific Reports 13 (1), 7285, 2023 | | 2023 |
| EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability C Shen, B Liu, KP Williams, T Warnow 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023), 2023 | | 2023 |
| Scalable Alignment and Tree Estimation on Large Protein Datasets. C Shen, B Liu, M Park, T Warnow, K Williams Sandia National Lab.(SNL-NM), Albuquerque, NM (United States), 2022 | | 2022 |
| SALMA: Scalable ALignment using MAFFT-Add C Shen, B Liu, KP Williams, T Warnow | | 2022 |
Tandy WarnowGrainger Distinguished Chair in Engineering, UIUCVerified email at illinois.edu
