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Jordan Bryan
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Computational correction of copy number effect improves specificity of CRISPR–Cas9 essentiality screens in cancer cells
RM Meyers, JG Bryan, JM McFarland, BA Weir, AE Sizemore, H Xu, ...
Nature genetics 49 (12), 1779-1784, 2017
15132017
Discovering the anticancer potential of non-oncology drugs by systematic viability profiling
SM Corsello, RT Nagari, RD Spangler, J Rossen, M Kocak, JG Bryan, ...
Nature cancer 1 (2), 235-248, 2020
5272020
Improved estimation of cancer dependencies from large-scale RNAi screens using model-based normalization and data integration
JM McFarland, ZV Ho, G Kugener, JM Dempster, PG Montgomery, ...
Nature communications 9 (1), 4610, 2018
3272018
An embryonic diapause-like adaptation with suppressed Myc activity enables tumor treatment persistence
E Dhimolea, R de Matos Simoes, D Kansara, A Al’Khafaji, J Bouyssou, ...
Cancer cell 39 (2), 240-256. e11, 2021
1592021
Genome-scale screens identify factors regulating tumor cell responses to natural killer cells
M Sheffer, E Lowry, N Beelen, M Borah, SNA Amara, CC Mader, JA Roth, ...
Nature Genetics 53 (8), 1196-1206, 2021
532021
Interactive or static reports to guide clinical interpretation of cancer genomics
SW Gray, J Gagan, E Cerami, AM Cronin, H Uno, N Oliver, C Lowenstein, ...
Journal of the American Medical Informatics Association 25 (5), 458-464, 2018
142018
Genome-scale functional genomics identify genes preferentially essential for multiple myeloma cells compared to other neoplasias
R de Matos Simoes, R Shirasaki, SL Downey-Kopyscinski, GM Matthews, ...
Nature Cancer 4 (5), 754-773, 2023
72023
Weighted classification cascades for optimizing discovery significance in the higgsml challenge
L Mackey, J Bryan, MY Mo
NIPS 2014 Workshop on High-energy Physics and Machine Learning, 129-134, 2015
72015
Likelihood ratio statistics for gene set enrichment in Alzheimer's disease pathways
J Bryan, A Mandan, G Kamat, WK Gottschalk, A Badea, KJ Adams, ...
Alzheimer's & Dementia 17 (4), 561-573, 2021
42021
Systematic characterization of genes representing preferential molecular vulnerabilities for myeloma cells compared to other neoplasias-implications for the biology and …
RDM Simoes, R Shirasaki, SL Downey-Kopyscinski, G Matthews, H Yiguo, ...
Blood 134, 4407, 2019
42019
Smaller p-values in genomics studies using distilled auxiliary information
JG Bryan, PD Hoff
Biostatistics 24 (1), 193-208, 2023
2*2023
Routine Estimation of Dissolved Organic Matter Sources Using Fluorescence Data and Linear Least Squares
J Bryan, P Hoff, CL Osburn
ACS ES&T Water 3 (8), 2073-2082, 2023
12023
Opportunities and challenges for analyzing cancer data at the inter-and intra-institutional levels
J Wu, J Bryan, SM Rubinstein, L Wang, M Lenoue-Newton, R Zuhour, ...
JCO Precision Oncology 4, 743-756, 2020
12020
Linear Source Apportionment using Generalized Least Squares
J Bryan, P Hoff
arXiv preprint arXiv:2310.12460, 2023
2023
Advanced Topics in Introductory Statistics
J Bryan
Duke University, 2023
2023
Large scale viability screening with PRISM underscores non-inhibitory properties of small molecules
L de Waal, K Larpenteur, L Wang, C Zhu, J Bryan, M Kocak, C Aghia, ...
Cancer Research 82 (12_Supplement), 1883-1883, 2022
2022
The multirank likelihood for semiparametric canonical correlation analysis
JG Bryan, J Niles-Weed, PD Hoff
arXiv preprint arXiv:2112.07465, 2021
2021
Large scale phenotypic screening using PRISM, integrated with functional genomic screening and transcriptional profiling accelerates target identification of cytotoxic small …
K Larpenteur, L de Waal, L Wang, M Kocak, J Bryan, S Bender, S Barkho, ...
MOLECULAR CANCER THERAPEUTICS 18 (12), 2019
2019
CRISPR studies identify genes preferentially essential for myeloma cells vs. other neoplasias: implications for future therapies selective against MM
R Shirasaki, R de Matos Simoes, S Downey-Kopyscinski, G Matthews, ...
Clinical Lymphoma, Myeloma and Leukemia 19 (10), e48-e49, 2019
2019
Massively parallel multiplexed methods to screen hundreds of barcoded cancer cell line models with small molecules or genetic perturbations using next-generation sequencing
S Bender, C Zhu, L Wang, M Rothberg, J Dempster, B Paolella, M Kocak, ...
Cancer Research 79 (13_Supplement), 2690-2690, 2019
2019
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