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Joseph R. Peterson
Joseph R. Peterson
SimBioSys, Inc.
Verified email at illinois.edu - Homepage
Title
Cited by
Cited by
Year
Uintah: a scalable framework for hazard analysis
M Berzins, J Luitjens, Q Meng, T Harman, CA Wight, JR Peterson
Proceedings of the 2010 TeraGrid Conference, 3, 2010
872010
Effects of DNA replication on mRNA noise
JR Peterson, JA Cole, J Fei, T Ha, ZA Luthey-Schulten
Proceedings of the National Academy of Sciences 112 (52), 15886-15891, 2015
522015
Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation Workloads
JE Stone, MJ Hallock, JC Phillips, JR Peterson, Z Luthey-Schulten, ...
IEEE Int Symp Parallel Distrib Process Workshops, 89-100, 2016
342016
Uintah User Guide Version 1.1
J Guilkey, T Harman, J Luitjens, J Schmidt, J Thornock, JDS Germain, ...
Scientific Computing and Imaging Institute, University of Utah, 2009
32*2009
Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function
SS Thor, JR Peterson, Z Luthey-Schulten
Archaea 2017, 2017
282017
Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans
JR Peterson, SS Thor, L Kohler, PRA Kohler, WW Metcalf, ...
BMC genomics 17 (1), 924, 2016
272016
An Eulerian–Lagrangian computational model for deflagration and detonation of high explosives
JR Peterson, CA Wight
Combustion and Flame 159 (7), 2491-2499, 2012
262012
Towards a Computational Model of a Methane Producing Archaeum
JR Peterson, P Labhsetwar, JR Ellermeier, PRA Kohler, A Jain, T Ha, ...
Archaea 2014 (Article ID 898453), 18 pages, 2014
232014
Multiscale Modeling of Accidental Explosions and Detonations.
JC Beckvermit, JR Peterson, T Harman, S Bardenhagen, CA Wight, ...
Computing in Science and Engineering 15 (4), 76-86, 2013
202013
An in-silico human cell model reveals the influence of spatial organization on RNA splicing
Z Ghaemi, JR Peterson, M Gruebele, Z Luthey-Schulten
PLOS Computational Biology 16 (3), e1007717, 2020
192020
Ribosome biogenesis in replicating cells: Integration of experiment and theory
TM Earnest, JA Cole, JR Peterson, MJ Hallock, TE Kuhlman, ...
Biopolymers 105 (10), 735-751, 2016
172016
A problem solving environment for stochastic biological simulations
JR Peterson, MJ Hallock, JA Cole, Z Luthey-Schulten
Proceedings High Performance Computing Networking, Storage and Analysis …, 2013
162013
Parametric studies of metabolic cooperativity in Escherichia coli colonies: Strain and geometric confinement effects
JR Peterson, JA Cole, Z Luthey-Schulten
PloS one 12 (8), e0182570, 2017
112017
Experimental Protein Structure Verification by Scoring with a Single, Unassigned NMR Spectrum
JM Courtney, Q Ye, AE Nesbitt, M Tang, MD Tuttle, ED Watt, KM Nuzzio, ...
Structure 23 (10), 1958-1966, 2015
112015
Stochastic simulations of cellular processes: from single cells to colonies
J Cole, MJ Hallock, P Labhsetwar, JR Peterson, JE Stone, ...
Computational Systems Biology: From Molecular Mechanisms to Disease: Second …, 2013
102013
Hybrid CME–ODE method for efficient simulation of the galactose switch in yeast
DM Bianchi, JR Peterson, TM Earnest, MJ Hallock, Z Luthey-Schulten
IET Systems Biology 12 (4), 170-176, 2018
92018
Multiscale modeling of high explosives for transportation accidents
JR Peterson, JC Beckvermit, T Harman, M Berzins, CA Wight
Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012
82012
Highly accurate response prediction in high-risk early breast cancer patients using a biophysical simulation platform
FM Howard, G He, JR Peterson, JR Pfeiffer, T Earnest, AT Pearson, H Abe, ...
Breast Cancer Research and Treatment 196 (1), 57-66, 2022
42022
Applying high-performance computing to petascale explosive simulations
JR Peterson, CA Wight, M Berzins
Procedia Computer Science 18, 2259-2268, 2013
32013
SimBioSys TumorScope: Spatio-temporal modeling of the tumor microenvironment to predict chemotherapeutic response.
JA Cole, JR Peterson, TM Earnest, MJ Hallock, JR Pfeiffer, T Pandey, ...
Journal of Clinical Oncology 38 (15_suppl), e12650-e12650, 2020
22020
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