| A complete reference genome improves analysis of human genetic variation S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ... Science 376 (6588), eabl3533, 2022 | 194 | 2022 |
| Reconstruction of ancestral genomes in presence of gene gain and loss P Avdeyev, S Jiang, S Aganezov, F Hu, MA Alekseyev Journal of Computational Biology 23 (3), 150-164, 2016 | 75 | 2016 |
| Evaluation of haplotype callers for next-generation sequencing of viruses A Eliseev, KM Gibson, P Avdeyev, D Novik, ML Bendall, M Pérez-Losada, ... Infection, Genetics and Evolution 82, 104277, 2020 | 42 | 2020 |
| Biological computation and computational biology: survey, challenges, and discussion Z Chelly Dagdia, P Avdeyev, MS Bayzid Artificial Intelligence Review 54 (6), 4169-4235, 2021 | 21 | 2021 |
| Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis A Zamyatin, P Avdeyev, J Liang, A Sharma, C Chen, V Lukyanchikova, ... GigaScience 10 (3), giab017, 2021 | 18 | 2021 |
| Dirichlet diffusion score model for biological sequence generation P Avdeyev, C Shi, Y Tan, K Dudnyk, J Zhou International Conference on Machine Learning, 1276-1301, 2023 | 13 | 2023 |
| Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes JP Bernot, P Avdeyev, A Zamyatin, N Dreyer, N Alexeev, M Pérez-Losada, ... GigaScience 11, 2022 | 10 | 2022 |
| A unified ILP framework for genome median, halving, and aliquoting problems under DCJ P Avdeyev, N Alexeev, Y Rong, MA Alekseyev Comparative Genomics: 15th International Workshop, RECOMB CG 2017, Barcelona …, 2017 | 9 | 2017 |
| Comparative genomics meets topology: a novel view on genome median and halving problems N Alexeev, P Avdeyev, MA Alekseyev BMC bioinformatics 17, 213-223, 2016 | 8 | 2016 |
| A unified ILP framework for core ancestral genome reconstruction problems P Avdeyev, N Alexeev, Y Rong, MA Alekseyev Bioinformatics 36 (10), 2993-3003, 2020 | 7 | 2020 |
| Linearization of Median Genomes Under the Double-Cut-and-Join-Indel Model P Avdeyev, S Jiang, MA Alekseyev Evolutionary Bioinformatics 15, 1176934318820534, 2019 | 6 | 2019 |
| Linearization of Ancestral Genomes with Duplicated Genes P Avdeyev, MA Alekseyev Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020 | 5 | 2020 |
| Implicit Transpositions in DCJ Scenarios P Avdeyev, S Jiang, MA Alekseyev Frontiers in genetics 8, 212, 2017 | 3 | 2017 |
| The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms K Walker, D Kalra, R Lowdon, G Chen, D Molik, DC Soto, F Dabbaghie, ... F1000Research 11 (530), 530, 2022 | 2 | 2022 |
| Computational Approaches for Understanding Sequence Variation Effects on the 3D Genome Architecture P Avdeyev, J Zhou Annual Review of Biomedical Data Science 5, 183-204, 2022 | 1 | 2022 |
| Orienting Ordered Scaffolds: Complexity and Algorithms S Aganezov, P Avdeyev, N Alexeev, Y Rong, MA Alekseyev SN Computer Science 3 (4), 308, 2022 | 1 | 2022 |
| A Uniform Theory of Adequate Subgraphs for the Genome Median, Halving, and Aliquoting Problems P Avdeyev, M Atamanova, MA Alekseyev Algorithms for Computational Biology: 6th International Conference, AlCoB …, 2019 | 1 | 2019 |
| TruEst: a better estimator of evolutionary distance under the INFER model A Zabelkin, P Avdeyev, N Alexeev Journal of Mathematical Biology 87 (2), 25, 2023 | | 2023 |
| Mathematical Models of Ancestral Genome Reconstruction P Avdeev The George Washington University, 2021 | | 2021 |
Max A. AlekseyevGeorge Washington UniversityVerified email at gwu.edu
