| Major impacts of widespread structural variation on gene expression and crop improvement in tomato M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ... Cell 182 (1), 145-161. e23, 2020 | 175 | 2020 |
| Paragraph: a graph-based structural variant genotyper for short-read sequence data S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ... Genome biology 20 (1), 1-13, 2019 | 54 | 2019 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... bioRxiv, 2021 | 49 | 2021 |
| Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing S Aganezov, S Goodwin, RM Sherman, FJ Sedlazeck, G Arun, S Bhatia, ... Genome research 30 (9), 1258-1273, 2020 | 25 | 2020 |
| A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 1-9, 2020 | 19 | 2020 |
| Genomic diversity of SARS-CoV-2 during early introduction into the United States National Capital Region PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ... MedRxiv, 2020 | 17 | 2020 |
| Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... BioRxiv, 2020 | 16 | 2020 |
| Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ... JCI insight 6 (6), 2021 | 11 | 2021 |
| Sapling: accelerating suffix array queries with learned data models M Kirsche, A Das, MC Schatz Bioinformatics 37 (6), 744-749, 2021 | 7 | 2021 |
| Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, S Aganezov, X Wang, Z Lippman, ... BioRxiv, 2021 | 1 | 2021 |
| Democratizing long-read genome assembly M Kirsche, MC Schatz Cell Systems 12 (10), 945-947, 2021 | | 2021 |
| Multi-tissue integrative analysis of personal epigenomes J Rozowsky, J Drenkow, Y Yang, G Gursoy, T Galeev, B Borsari, ... | | 2021 |
| A complete reference genome improves analysis of human genetic variation S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ... bioRxiv, 2021 | | 2021 |
| Jasmine: Population-scale structural variant comparison and analysis M Kirsche, G Prabhu, R Sherman, B Ni, S Aganezov, MC Schatz BioRxiv, 2021 | | 2021 |
