Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 140 | 2020 |
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ... Nature Communications 11 (1), 1018, 2020 | 130 | 2020 |
Recurrent neural networks SA Marhon, CJF Cameron, SC Kremer Handbook on neural information processing, 29-65, 2013 | 71 | 2013 |
PAM multiplicity marks genomic target sites as inhibitory to CRISPR-Cas9 editing A Malina, CJF Cameron, F Robert, M Blanchette, J Dostie, J Pelletier Nature communications 6 (1), 10124, 2015 | 62* | 2015 |
HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution CJF Cameron, J Dostie, M Blanchette Genome biology 21, 1-15, 2020 | 30 | 2020 |
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ... Cell 186 (7), 1493-1511. e40, 2023 | 29* | 2023 |
Double-stranded biotinylated donor enhances homology-directed repair in combination with Cas9 monoavidin in mammalian cells PJR Roche, H Gytz, F Hussain, CJF Cameron, D Paquette, M Blanchette, ... The CRISPR Journal 1 (6), 414-430, 2018 | 18* | 2018 |
Dynamic quality control machinery that operates across compartmental borders mediates the degradation of mammalian nuclear membrane proteins PL Tsai, CJF Cameron, MF Forni, RR Wasko, BS Naughton, V Horsley, ... Cell reports 41 (8), 2022 | 11 | 2022 |
Nodal modulator (NOMO) is required to sustain endoplasmic reticulum morphology C Amaya, CJF Cameron, SC Devarkar, SJH Seager, MB Gerstein, ... Journal of Biological Chemistry 297 (2), 2021 | 9* | 2021 |
2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing XQD Wang, CJF Cameron, D Paquette, D Segal, R Warsaba, ... BMC genomics 20, 1-16, 2019 | 9 | 2019 |
Handbook on neural information processing SA Marhon, CJF Cameron, SC Kremer Intelligent Systems Reference Library 49, 10-1007, 2013 | 9 | 2013 |
SACSANN: identifying sequence-based determinants of chromosomal compartments JA Prost, CJF Cameron, M Blanchette bioRxiv, 2020.10. 06.328039, 2020 | 4 | 2020 |
LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads CJF Cameron, XQD Wang, J Dostie, M Blanchette BMC Research Notes 13, 1-4, 2020 | 3 | 2020 |
End-to-end chromosomal compartment prediction from reference genomes M Kirchhof, CJ Cameron, SC Kremer 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 2 | 2021 |
Mapping and visualizing spatial genome organization CJF Cameron, J Fraser, M Blanchette, J Dostie The Functional Nucleus, 359-383, 2016 | 1 | 2016 |
Neural grammar networks for toxicology CJF Cameron, EYT Ma, SC Kremer 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and …, 2010 | 1 | 2010 |
Posterior inference of Hi-C contact frequency through sampling Y Zhang, CJF Cameron, M Blanchette Frontiers in Bioinformatics 3, 1285828, 2024 | | 2024 |
REPIC—an ensemble learning methodology for cryo-EM particle picking CJF Cameron, SJH Seager, FJ Sigworth, HD Tagare, MB Gerstein bioRxiv, 2023.05. 13.540636, 2023 | | 2023 |
MIDLS-Membrane detection in cryo-EM using deep level sets CJF Cameron, FJ Sigworth, M Gerstein, HD Tagare Biophysical Journal 122 (3), 139a, 2023 | | 2023 |
Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP XQD Wang, CJF Cameron, D Segal, D Paquette, M Blanchette, J Dostie Capturing Chromosome Conformation: Methods and Protocols, 127-157, 2021 | | 2021 |