| The DNA-encoded nucleosome organization of a eukaryotic genome N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett, D Tillo, Y Field, ... Nature 458 (7236), 362-366, 2009 | 1275 | 2009 |
| A high-resolution atlas of nucleosome occupancy in yeast W Lee, D Tillo, N Bray, RH Morse, RW Davis, TR Hughes, C Nislow Nature genetics 39 (10), 1235-1244, 2007 | 979 | 2007 |
| A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters G Badis, ET Chan, H van Bakel, L Pena-Castillo, D Tillo, K Tsui, ... Molecular cell 32 (6), 878-887, 2008 | 471 | 2008 |
| G+ C content dominates intrinsic nucleosome occupancy D Tillo, TR Hughes BMC bioinformatics 10 (1), 1-13, 2009 | 292 | 2009 |
| High nucleosome occupancy is encoded at human regulatory sequences D Tillo, N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett, Y Field, ... PloS one 5 (2), e9129, 2010 | 183 | 2010 |
| Nucleosome sequence preferences influence in vivo nucleosome organization N Kaplan, I Moore, Y Fondufe-Mittendorf, AJ Gossett, D Tillo, Y Field, ... Nature structural & molecular biology 17 (8), 918-920, 2010 | 131 | 2010 |
| Nucleosome maps of the human cytomegalovirus genome reveal a temporal switch in chromatin organization linked to a major IE protein E Zalckvar, C Paulus, D Tillo, A Asbach-Nitzsche, Y Lubling, C Winterling, ... Proceedings of the National Academy of Sciences 110 (32), 13126-13131, 2013 | 38 | 2013 |
| Custom DNA microarrays reveal diverse binding preferences of proteins and small molecules to thousands of G-quadruplexes S Ray, D Tillo, RE Boer, N Assad, M Barshai, G Wu, Y Orenstein, D Yang, ... ACS chemical biology 15 (4), 925-935, 2020 | 22 | 2020 |
| Methylated cytosines mutate to transcription factor binding sites that drive tetrapod evolution X He, D Tillo, J Vierstra, KS Syed, C Deng, GJ Ray, ... Genome biology and evolution 7 (11), 3155-3169, 2015 | 17 | 2015 |
| The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine D Tillo, S Ray, KS Syed, MR Gaylor, X He, J Wang, N Assad, SR Durell, ... Biochemistry 56 (47), 6200-6210, 2017 | 14 | 2017 |
| 5-Methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) enhance the DNA binding of CREB1 to the C/EBP half-site tetranucleotide GCAA KS Syed, X He, D Tillo, J Wang, SR Durell, C Vinson Biochemistry 55 (49), 6940-6948, 2016 | 14 | 2016 |
| Inheritance of cytosine methylation D Tillo, S Mukherjee, C Vinson Journal of cellular physiology 231 (11), 2346-2352, 2016 | 12 | 2016 |
| GABPα binding to overlapping ETS and CRE DNA motifs is enhanced by CREB1: custom DNA microarrays X He, KS Syed, D Tillo, I Mann, MT Weirauch, C Vinson G3: Genes, Genomes, Genetics 5 (9), 1909-1918, 2015 | 7 | 2015 |
| Custom G4 microarrays reveal selective G-quadruplex recognition of small molecule BMVC: a large-scale assessment of ligand binding selectivity G Wu, D Tillo, S Ray, TC Chang, JS Schneekloth, C Vinson, D Yang Molecules 25 (15), 3465, 2020 | 6 | 2020 |
| Replacing C189 in the bZIP domain of Zta with S, T, V, or A changes DNA binding specificity to four types of double-stranded DNA S Ray, D Tillo, N Assad, A Ufot, C Deppmann, SR Durell, A Porollo, ... Biochemical and biophysical research communications 501 (4), 905-912, 2018 | 5 | 2018 |
| CTCF is a barrier for 2C-like reprogramming T Olbrich, M Vega-Sendino, D Tillo, W Wu, N Zolnerowich, R Pavani, ... Nature communications 12 (1), 1-12, 2021 | 4 | 2021 |
| Nucleosomes are enriched at the boundaries of hypomethylated regions (HMRs) in mouse dermal fibroblasts and keratinocytes X He, R Chatterjee, D Tillo, A Smith, P FitzGerald, C Vinson Epigenetics & chromatin 7 (1), 1-10, 2014 | 4 | 2014 |
| The bZIP mutant CEBPB (V285A) has sequence specific DNA binding propensities similar to CREB1 S Ray, A Ufot, N Assad, J Singh, SR Durell, A Porollo, D Tillo, C Vinson Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1862 (4), 486-492, 2019 | 3 | 2019 |
| bZIP Dimers CREB1, ATF2, Zta, ATF3| cJun, and cFos| cJun Prefer to Bind to Some Double-Stranded DNA Sequences Containing 5-Formylcytosine and 5-Carboxylcytosine S Ray, D Tillo, A Ufot, N Assad, S Durell, C Vinson Biochemistry 59 (38), 3529-3540, 2020 | 1 | 2020 |
| CTCF is a Barrier for Totipotent-like Reprogramming T Olbrich, M Vega-Sendino, D Tillo, W Wu, N Zolnerowich, AD Tran, ... bioRxiv, 2020 | 1 | 2020 |
