| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 382 | 2020 |
| Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps B Chen, S Cherie’R, ET McKinley, AJ Simmons, MA Ramirez-Solano, ... Cell 184 (26), 6262-6280. e26, 2021 | 153 | 2021 |
| Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer JR Lin, S Wang, S Coy, YA Chen, C Yapp, M Tyler, MK Nariya, CN Heiser, ... Cell 186 (2), 363-381. e19, 2023 | 100 | 2023 |
| A quantitative framework for evaluating single-cell data structure preservation by dimensionality reduction techniques CN Heiser, KS Lau Cell reports 31 (5), 2020 | 51 | 2020 |
| Human Colon Cancer–Derived Clostridioides difficile Strains Drive Colonic Tumorigenesis in Mice JL Drewes, J Chen, NO Markham, RJ Knippel, JC Domingue, AJ Tam, ... Cancer discovery 12 (8), 1873-1885, 2022 | 48 | 2022 |
| Automated quality control and cell identification of droplet-based single-cell data using dropkick CN Heiser, VM Wang, B Chen, JJ Hughey, KS Lau Genome Research 31 (10), 1742-1752, 2021 | 30 | 2021 |
| MIRIAM: A machine and deep learning single‐cell segmentation and quantification pipeline for multi‐dimensional tissue images ET McKinley, J Shao, ST Ellis, CN Heiser, JT Roland, MC Macedonia, ... Cytometry Part A 101 (6), 521-528, 2022 | 24 | 2022 |
| Coregulator Sin3a promotes postnatal murine β-cell fitness by regulating genes in Ca2+ homeostasis, cell survival, vesicle biosynthesis, glucose metabolism, and stress response X Yang, SM Graff, CN Heiser, KH Ho, B Chen, AJ Simmons, ... Diabetes 69 (6), 1219-1231, 2020 | 13 | 2020 |
| A cross-platform informatics system for the Gut Cell Atlas: integrating clinical, anatomical and histological data S Bao, S Chiron, Y Tang, CN Heiser, AN Southard-Smith, HH Lee, ... Medical Imaging 2021: Imaging Informatics for Healthcare, Research, and …, 2021 | 9 | 2021 |
| Molecular cartography uncovers evolutionary and microenvironmental dynamics in sporadic colorectal tumors CN Heiser, AJ Simmons, F Revetta, ET McKinley, MA Ramirez-Solano, ... Cell 186 (25), 5620-5637. e16, 2023 | 8 | 2023 |
| Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools B Chen, MA Ramirez-Solano, CN Heiser, Q Liu, KS Lau STAR protocols 2 (2), 100450, 2021 | 8 | 2021 |
| Human colorectal pre-cancer atlas identifies distinct molecular programs underlying two major subclasses of pre-malignant tumors B Chen, ET McKinley, AJ Simmons, MA Ramirez-Solano, X Zhu, ... Biorxiv, 2021.01. 11.426044, 2021 | 5 | 2021 |
| A contamination focused approach for optimizing the single-cell RNA-seq experiment D Arceneaux, Z Chen, AJ Simmons, CN Heiser, AN Southard-Smith, ... Iscience 26 (7), 2023 | 4 | 2023 |
| Influence of social determinants of health and county vaccination rates on machine learning models to predict COVID-19 case growth in Tennessee LS Wylezinski, CR Harris, CN Heiser, JD Gray, CF Spurlock BMJ Health & Care Informatics 28 (1), 2021 | 4 | 2021 |
| Consensus tissue domain detection in spatial multi-omics data using MILWRM H Kaur, CN Heiser, ET McKinley, L Ventura-Antunes, CR Harris, ... bioRxiv, 2023.02. 02.526900, 2023 | 1 | 2023 |
| Deleted in malignant brain tumors 1 (DMBT1) glycoprotein is lost in colonic dysplasia EH Green, SR Kotrannavar, ME Rutherford, H Kaur, HM Lunnemann, ... Cancer Research 84 (6_Supplement), 6693-6693, 2024 | | 2024 |
| Identification of T cell and B cell repertoires from whole blood RNA sequencing in multiple sclerosis and neuromyelitis optica C Heiser, L Wylezinski, C Sesler, G Shaginurova, E Grigorenko, ... MULTIPLE SCLEROSIS JOURNAL 29, 114-115, 2023 | | 2023 |
| GammaGateR: semi-automated marker gating for single-cell multiplexed imaging J Xiong, H Kaur, CN Heiser, ET McKinley, JT Roland, RJ Coffey, ... bioRxiv, 2023 | | 2023 |
| Single-cell transcriptomics reveals heterogenous thymic dendritic cell subsets with distinct functions and requirements for thymocyte-regulated crosstalk J Srinivasan, BR Helm, Y Yang, C Moore, JF Moore, A Calindi, HJ Selden, ... bioRxiv, 2023.12. 18.572281, 2023 | | 2023 |
| Abstract B031: The effects of tissue processing and microfluidic factors on single-cell RNA-sequencing data quality in colorectal tissues DL Arceneaux, Z Chen, J Simmons, B Chen, C Heiser, Y Xu Cancer Research 82 (23_Supplement_1), B031-B031, 2022 | | 2022 |
