| Singular value decomposition for genome-wide expression data processing and modeling O Alter, PO Brown, D Botstein Proceedings of the National Academy of Sciences (PNAS) USA 97 (18), 10101–10106, 2000 | 2631 | 2000 |
| Molecular characterisation of soft tissue tumours: a gene expression study TO Nielsen, RB West, SC Linn, O Alter, MA Knowling, JX O'Connell, S Zhu, ... Lancet 359 (9314), 1301–1307, 2002 | 742 | 2002 |
| Generalized singular value decomposition for comparative analysis of genome-scale expression datasets of two different organisms O Alter, PO Brown, D Botstein Proceedings of the National Academy of Sciences (PNAS) USA 100 (6), 3351–3356, 2003 | 401 | 2003 |
| Variation in gene expression patterns in follicular lymphoma and the response to rituximab SP Bohen, OG Troyanskaya, O Alter, R Warnke, D Botstein, PO Brown, ... Proceedings of the National Academy of Sciences (PNAS) USA 100 (4), 1926–1930, 2003 | 209 | 2003 |
| A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies L Omberg, GH Golub, O Alter Proceedings of the National Academy of Sciences (PNAS) USA 104 (47), 18371–18376, 2007 | 201 | 2007 |
| A higher-order generalized singular value decomposition for comparison of global mRNA expression from multiple organisms SP Ponnapalli, MA Saunders, CF Van Loan, O Alter Public Library of Science (PLoS) One 6 (12), article e28072, 2011 | 128 | 2011 |
| Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription O Alter, GH Golub Proceedings of the National Academy of Sciences (PNAS) USA 101 (47), 16577–16582, 2004 | 101 | 2004 |
| Tensor GSVD of patient-and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations … P Sankaranarayanan*, TE Schomay*, KA Aiello, O Alter Public Library of Science (PLoS) One 10 (4), article e0121396, 2015 | 90 | 2015 |
| Singular value decomposition of genome-scale mRNA lengths distribution reveals asymmetry in RNA gel electrophoresis band broadening O Alter, GH Golub Proceedings of the National Academy of Sciences (PNAS) USA 103 (32), 11828–11833, 2006 | 62 | 2006 |
| Reconstructing the pathways of a cellular system from genome-scale signals by using matrix and tensor computations O Alter, GH Golub Proceedings of the National Academy of Sciences (PNAS) USA 102 (49), 17559–17564, 2005 | 62 | 2005 |
| Processing and modeling genome-wide expression data using singular value decomposition O Alter, PO Brown, D Botstein Microarrays: Optical Technologies and Informatics. Bellingham, WA …, 2001 | 57 | 2001 |
| Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression L Omberg, JR Meyerson, K Kobayashi, LS Drury, JFX Diffley, O Alter Molecular Systems Biology (MSB) 5, article 312, 2009 | 51 | 2009 |
| Quantum Measurement of a Single System O Alter, Y Yamamoto New York, NY: Wiley. https://alterlab.org/publications …, 2001 | 45 | 2001 |
| GSVD comparison of patient-matched normal and tumor aCGH profiles reveals global copy-number alterations predicting glioblastoma multiforme survival CH Lee*, BO Alpert*, P Sankaranarayanan, O Alter Public Library of Science (PLoS) One 7 (1), article e30098, 2012 | 44 | 2012 |
| Inhibition of the measurement of the wave function of a single quantum system in repeated weak quantum nondemolition measurements O Alter, Y Yamamoto Physical Review Letters 74 (21), 4106–4109, 1995 | 44 | 1995 |
| Discovery of principles of nature from mathematical modeling of DNA microarray data O Alter Proceedings of the National Academy of Sciences (PNAS) USA 103 (44), 16063–16064, 2006 | 34 | 2006 |
| Genomic signal processing: from matrix algebra to genetic networks O Alter Microarray Data Analysis: Methods and Applications. Berlin, Germany …, 2007 | 32 | 2007 |
| Quantum Zeno effect and the impossibility of determining the quantum state of a single system O Alter, Y Yamamoto Physical Review A Rapid Communications 55 (4), R2499–R2502, 1997 | 31 | 1997 |
| SVD identifies transcript length distribution functions from DNA microarray Data and reveals evolutionary forces globally affecting GBM metabolism NM Bertagnolli, JA Drake, JM Tennessen, O Alter Public Library of Science (PLoS) One 8 (11), article e78913, 2013 | 21 | 2013 |
| Novel genome-scale correlation between DNA replication and RNA transcription during the cell cycle in yeast is predicted by data-driven models O Alter, GH Golub, PO Brown, D Botstein Miami Nature Biotechnology Winter Symposium: Cell Cycle, Chromosomes and …, 2004 | 20 | 2004 |
