| Comprehensive analysis and accurate quantification of unintended large gene modifications induced by CRISPR-Cas9 gene editing SH Park, M Cao, Y Pan, TH Davis, L Saxena, H Deshmukh, Y Fu, ... Science Advances 8 (42), eabo7676, 2022 | 32 | 2022 |
| deGSM: memory scalable construction of large scale de Bruijn graph H Guo, Y Fu, Y Gao, J Li, Y Wang, B Liu IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2019 | 22 | 2019 |
| Acanthopanax senticosus reduces brain injury in mice exposed to low linear energy transfer radiation AY Zhou, BW Song, CY Fu, DD Baranenko, EJ Wang, FY Li, GW Lu Biomedicine & Pharmacotherapy 99, 781-790, 2018 | 22 | 2018 |
| Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment Y Fu, M Mahmoud, VV Muraliraman, FJ Sedlazeck, TJ Treangen GigaScience 10 (9), giab063, 2021 | 16 | 2021 |
| SpliVert: a protein multiple sequence alignment refinement method based on splitting-splicing vertically Q Zhan, Y Fu, Q Jiang, B Liu, J Peng, Y Wang Protein and Peptide Letters 27 (4), 295-302, 2020 | 7 | 2020 |
| KOMB: K-core based de novo characterization of copy number variation in microbiomes A Balaji, N Sapoval, C Seto, RAL Elworth, Y Fu, MG Nute, T Savidge, ... Computational and Structural Biotechnology Journal 20, 3208-3222, 2022 | 6 | 2022 |
| Long-read based novel sequence insertion detection with rCANID T Jiang, Y Fu, B Liu, Y Wang IEEE Transactions on NanoBioscience 18 (3), 343-352, 2019 | 5 | 2019 |
| MethPhaser: methylation-based haplotype phasing of human genomes Y Fu, S Aganezov, M Mahmoud, J Beaulaurier, S Juul, TJ Treangen, ... bioRxiv, 2023.05. 12.540573, 2023 | 2 | 2023 |
| The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms K Walker, D Kalra, R Lowdon, G Chen, D Molik, DC Soto, F Dabbaghie, ... F1000Research 11, 2022 | 2 | 2022 |
| Sensitivity and consistency of long-and short-read metagenomics and epicPCR for the detection of antibiotic resistance genes and their bacterial hosts in wastewater EG Lou, Y Fu, Q Wang, TJ Treangen, LB Stadler Journal of Hazardous Materials 469, 133939, 2024 | 1 | 2024 |
| Unveiling microbial diversity: harnessing long-read sequencing technology DP Agustinho, Y Fu, VK Menon, GA Metcalf, TJ Treangen, FJ Sedlazeck Nature Methods, 1-13, 2024 | 1 | 2024 |
| Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens MX Wang, EG Lou, N Sapoval, E Kim, P Kalvapalle, B Kille, RAL Elworth, ... bioRxiv, 2023 | 1 | 2023 |
| Fast variation-aware read alignment with deBGA-VARA H Guo, B Liu, D Guan, Y Fu, Y Wang 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 1 | 2018 |
| MethPhaser: methylation-based long-read haplotype phasing of human genomes Y Fu, S Aganezov, M Mahmoud, J Beaulaurier, S Juul, TJ Treangen, ... Nature Communications 15 (1), 5327, 2024 | | 2024 |
| Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine M Mahmoud, AR Gener, MM Khayat, AC English, A Balaji, A Zhou, ... F1000Research 9 (1141), 1141, 2020 | | 2020 |
| Fast read alignment with incorporation of known genomic variants H Guo, B Liu, D Guan, Y Fu, Y Wang BMC Medical Informatics and Decision Making 19, 1-13, 2019 | | 2019 |
| rCANID: read Clustering and Assembly-based Novel Insertion Detection tool Y Fu, T Jiang, B Liu, Y Wang 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | | 2018 |
Todd J. TreangenAssociate Professor, Department of Computer Science, Rice UniversityVerified email at rice.edu
