Yanming Di

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Jeff ChangBotany and Plant Pathology, Oregon State UniversityVerified email at science.oregonstate.edu
Joseph W. SpataforaOregon State UniversityVerified email at science.oregonstate.edu
Pankaj JaiswalProfessor, Botany and Plant Pathology, Oregon State UniversityVerified email at science.oregonstate.edu
Todd C. MocklerMember, Donald Danforth Plant Science CenterVerified email at danforthcenter.org
Gu MiDirector of Biostatistics at SanofiVerified email at onid.orst.edu
Jeffrey KimbrelLawrence Livermore National LabVerified email at llnl.gov
Brian KnausOregon State UniversityVerified email at science.oregonstate.edu
Michael FreitagOregon State UniversityVerified email at onid.orst.edu
Molly MegrawCenter for Genome Research & Biocomputing, Oregon State UniversityVerified email at science.oregonstate.edu
Christopher M. SullivanCollege of Earth, Ocean, and Atmospheric Sciences - Oregon State UniversityVerified email at oregonstate.edu
James C. CarringtonDonald Danforth Plant Science CenterVerified email at danforthcenter.org
Shawn T O'NeilAssistant Professor of Research, University of Colorado AnschutzVerified email at cgrb.oregonstate.edu
C. Alisha QuandtAssistant Professor, University of Colorado BoulderVerified email at colorado.edu
Audrey Qiuyan FuUniversity of IdahoVerified email at uidaho.edu
Huan LiuRegents Professor, Arizona State UniversityVerified email at asu.edu
Zheyang WuProfessor of Mathematical Sciences (Statistics)Verified email at wpi.edu
Saonli BasuProfessor, Division of Biostatistics, University of MinnesotaVerified email at umn.edu
Frederick J. BoehmUniversity of MichiganVerified email at umich.edu
Charles Y K CheungCIHR Postdoctoral Fellow, Fred Hutchinson Cancer Research CenterVerified email at fhcrc.org
Yuan JiangAssociate Professor of Statistics, Oregon State UniversityVerified email at oregonstate.edu

Yanming Di

Oregon State University

Verified email at stat.oregonstate.edu

statistical genetics and genomics experimental design statistical applications


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The NBP negative binomial model for assessing differential gene expression from RNA-Seq Y Di, DW Schafer, JS Cumbie, JH Chang Statistical applications in genetics and molecular biology 10 (1), 2011	249	2011
The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster KE Bushley, R Raja, P Jaiswal, JS Cumbie, M Nonogaki, AE Boyd, ... PLoS genetics 9 (6), e1003496, 2013	187	2013
Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa K Vining, KR Pomraning, LJ Wilhelm, C Ma, M Pellegrini, Y Di, ... BMC plant biology 13, 1-15, 2013	123	2013
GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences JS Cumbie, JA Kimbrel, Y Di, DW Schafer, LJ Wilhelm, SE Fox, ... PloS one 6 (10), e25279, 2011	91	2011
A comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries S Gouthu, ST O’Neil, Y Di, M Ansarolia, M Megraw, LG Deluc Journal of Experimental Botany 65 (20), 5889-5902, 2014	58	2014
Length bias correction in gene ontology enrichment analysis using logistic regression G Mi, Y Di, S Emerson, JS Cumbie, JH Chang Public Library of Science 7 (10), e46128, 2012	37	2012
Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides CA Quandt, Y Di, J Elser, P Jaiswal, JW Spatafora G3: Genes, Genomes, Genetics 6 (3), 731-741, 2016	28	2016
Goodness-of-fit tests and model diagnostics for negative binomial regression of RNA sequencing data G Mi, Y Di, DW Schafer PLoS One 10 (3), e0119254, 2015	22	2015
RNA-Seq for plant pathogenic bacteria JA Kimbrel, Y Di, JS Cumbie, JH Chang Genes 2 (4), 689-705, 2011	18	2011
Model-based clustering with measurement or estimation errors W Zhang, Y Di Genes 11 (2), 185, 2020	16	2020
Identifying stably expressed genes from multiple RNA-Seq data sets B Zhuo, S Emerson, JH Chang, Y Di PeerJ 4, e2791, 2016	16	2016
Comparison of multipoint linkage analyses for quantitative traits in the CEPH data: parametric LOD scores, variance components LOD scores, and Bayes factors YJ Sung, Y Di, AQ Fu, JH Rothstein, W Sieh, L Tong, EA Thompson, ... BMC proceedings 1, 1-6, 2007	16	2007
Higher order asymptotics for negative binomial regression inferences from RNA-sequencing data Y Di, SC Emerson, DW Schafer, JA Kimbrel, JH Chang Statistical applications in genetics and molecular biology 12 (1), 49-70, 2013	12	2013
Detecting hidden information in images: A comparative study Y Di, H Liu, A Ramineni, A Sen 2nd Workshop on Privacy Preserving Data Mining (PPDM), 2003	12	2003
Single-gene negative binomial regression models for RNA-Seq data with higher-order asymptotic inference Y Di Statistics and its interface 8 (4), 405, 2015	11	2015
Effect of linkage disequilibrium on the identification of functional variants A Thomas, HJ Abel, Y Di, LL Faye, J Jin, J Liu, Z Wu, AD Paterson Genetic Epidemiology 35 (S1), S115-S119, 2011	9	2011
Exact Trait‐Model‐Free Tests for Linkage Detection in Pedigrees S Basu, Y Di, EA Thompson Annals of human genetics 72 (5), 676-682, 2008	8	2008
Characterizing the extracellular matrix transcriptome of cervical, endometrial, and uterine cancers CJ Cook, AE Miller, TH Barker, Y Di, KC Fogg Matrix Biology Plus 15, 100117, 2022	5	2022
Test-statistic correlation and data-row correlation B Zhuo, D Jiang, Y Di Statistics & probability letters 167, 108903, 2020	5	2020
Conditional tests for localizing trait genes Y Di, EA Thompson Human heredity 68 (2), 139-150, 2009	5	2009

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