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Amita Sahoo
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Year
The Model Structures of the Complement Component 5a Receptor (C5aR) Bound to the Native and Engineered hC5a
AR Sahoo, R Mishra, S Rana
Scientific Reports 8 (1), 2955, 2018
202018
Model structures of inactive and peptide agonist bound C5aR: Insights into agonist binding, selectivity and activation
S Rana, AR Sahoo
Biochemistry and Biophysics Reports 1, 85-96, 2015
182015
Structural complexes of the agonist, inverse agonist and antagonist bound C5a receptor: insights into pharmacology and signaling
S Rana, AR Sahoo, BK Majhi
Molecular Biosystems 12 (5), 1586-1599, 2016
112016
Conformational clamping by a membrane ligand activates the EphA2 receptor
JM Westerfield, AR Sahoo, DS Alves, B Grau, A Cameron, M Maxwell, ...
Journal of molecular biology 433 (18), 167144, 2021
102021
Allosterism in human complement component 5a (hC5a): a damper of C5a receptor (C5aR) signaling
S Rana, AR Sahoo, BK Majhi
Journal of Biomolecular Structure and Dynamics 34 (6), 1201-1213, 2016
102016
Structural and functional insights into the transmembrane domain association of Eph receptors
AR Sahoo, M Buck
International Journal of Molecular Sciences 22 (16), 8593, 2021
92021
Transmembrane dimers of type 1 receptors sample alternate configurations: MD simulations using coarse grain Martini 3 versus AlphaFold2 Multimer
AR Sahoo, PCT Souza, Z Meng, M Buck
Structure 31 (6), 735-745. e2, 2023
52023
Allosteric inhibition of the epidermal growth factor receptor through disruption of transmembrane interactions
JA Rybak, AR Sahoo, S Kim, RJ Pyron, SB Pitts, S Guleryuz, AW Smith, ...
Journal of Biological Chemistry 299 (7), 2023
32023
Predicting Transmembrane (TM) Domain Dimer Structures using Martini 3
AR Sahoo, PCT Souza, Z Meng, M Buck
bioRxiv 3, 2021
22021
How transmembrane helices of type 1 receptors transmit information: prediction of dimers with the Martini 3 coarse grained model
AR Sahoo, PCT Souza, Z Meng, M Buck
Biophysical Journal 121 (3), 464a, 2022
12022
Exploring isoform variations in EphA1 and EphA2 homo-dimerization: Molecular dynamics simulation of their transmembrane and membrane proximal regions
AR Sahoo
Biophysical Journal 123 (3), 212a, 2024
2024
Cholesterol blocks oncogenic EphA2 activity and self-assembly as revealed by SiMPull-POP
RJ Schuck, A Ward, RJ Pyron, N Trybala, AR Sahoo, M Buck, JA Baccile, ...
Biophysical Journal 123 (3), 346a, 2024
2024
Using Martini 3, Alphafold2 Multimer and solution NMR to Understand the Structural Basis of EphA2 Dimerization and Domain-Membrane Interactions of the Transmembrane-and …
A Sahoo, P Shrestha, M Buck
PROTEIN SCIENCE 32 (12), 2023
2023
Inhibition of EGFR via an acidity-responsive transmembrane peptide ligand
JA Rybak, AR Sahoo, S Kim, RJ Pyron, SB Pitts, AW Smith, M Buck, ...
Biophysical Journal 122 (3), 369a-370a, 2023
2023
Biophysical characterization of Raf RBD-CRD-KD interactions in the autoinhibited state
B Jamal, R Quan, M Iannucci, Z Li, C Prasanna, AR Sahoo, M Buck
Biophysical Journal 122 (3), 328a, 2023
2023
Using martini3 and alphafold2 for understanding the structural basis of epha2-dimerization,-membrane interactions and implications of tm/jm mutations in cancer progression
M Buck, A Sahoo, P Shrestha
Journal of Biological Chemistry 299 (3), S446, 2023
2023
Understanding the Structural Basis of Epha1 and Epha2 Homo‐Dimerization, Membrane Proximal Domain Interactions and its Implications for Cancer
M Buck, A Sahoo
The FASEB Journal 36, 2022
2022
Transmembrane region dimer structures of Type 1 receptors readily sample alternate configurations: MD simulations using the Martini 3 coarse grained model compared to …
AR Sahoo, PCT Souza, Z Meng, M Buck
bioRxiv, 2021.09. 10.459840, 2021
2021
Understanding the Structural Basis of Epha2‐dimerization,‐membrane Interactions and Its Implications in Cancer Progression
A Sahoo, P Shrestha, M Buck
The FASEB Journal 35, 2021
2021
Structural and Functional Studies of the Effects of Phosphorylation on Ephrin Receptor Tyrosine Kinase, EphA2, and the Relationship with its Sam Domain as an Autoinhibitor
P Shrestha, Z Li, AR Sahoo, X Shi, FR Javier, D Bowman, ...
Biophysical Journal 120 (3), 7a, 2021
2021
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Articles 1–20