Ajay N. Jain

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Ann E ClevesVice President of Application Science, BioPharmics Division, OptibriumVerified email at jainlab.org
Joe GrayBiomedical Engineering, Oregon Health and Science UniversityVerified email at ohsu.edu
Antoine M. SnijdersLawrence Berkeley National LaboratoryVerified email at lbl.gov
peter carrollProfessor of Urology, university of California san franciscoVerified email at ucsf.edu
Colin Collins, PhDProfessor of Urologic Sciences, University of British Columbia and Vancouver Prostate CentreVerified email at prostatecentre.com
laura essermanProfessor of Surgery and Radiology, University of California, San FranciscoVerified email at ucsf.edu
William WelchStatistical Learning at Jut.ioVerified email at quietplease.com
Jim RuppertVerified email at tetrahedra.com
Ylstra BaukeVU University Medical CenterVerified email at vumc.nl
Thomas DietterichDistinguished Professor (Emeritus), Computer Science, Oregon State UniversityVerified email at cs.orst.edu
herman van dekkenzelfstandig ondernemer zorgVerified email at bevolkingsonderzoeknoord.nl
Joris VeltmanBiosciences Institute, Newcastle University, United KingdomVerified email at newcastle.ac.uk
Roger CritchlowVerified email at elf.org
Paul SpellmanUniversity of California Los AngelesVerified email at mednet.ucla.edu
Richard H. LathropProfessor of Computer Science, University of California IrvineVerified email at uci.edu
Jonathan TerdimanUniversity of California, San FranciscoVerified email at ucsf.edu
Tomas Lozano-PerezProfessor of Computer Science, MITVerified email at mit.edu
Emmanuel R. YeraDirector of Product Engineering @ Primer | PhD from UCSFVerified email at primer.ai
William A. WeissProfessor of Neurology, UCSFVerified email at ucsf.edu
Stas VolikScientist, Vancouver Prostate CentreVerified email at prostatecentre.com

Ajay N. Jain

Professor of Bioengineering, University of California San Francisco

Verified email at jainlab.org

Computational Chemistry Computational Biology Bioinformatics


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Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine AN Jain Journal of medicinal chemistry 46 (4), 499-511, 2003	1583	2003
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies K Chin, S DeVries, J Fridlyand, PT Spellman, R Roydasgupta, WL Kuo, ... Cancer cell 10 (6), 529-541, 2006	1495	2006
Assembly of microarrays for genome-wide measurement of DNA copy number AM Snijders, N Nowak, R Segraves, S Blackwood, N Brown, J Conroy, ... Nature genetics 29 (3), 263-264, 2001	1233	2001
Determinants of BRAF mutations in primary melanomas JL Maldonado, J Fridlyand, H Patel, AN Jain, K Busam, T Kageshita, ... Journal of the National Cancer Institute 95 (24), 1878-1890, 2003	821	2003
Scoring noncovalent protein-ligand interactions: a continuous differentiable function tuned to compute binding affinities AN Jain Journal of computer-aided molecular design 10, 427-440, 1996	720	1996
Surflex-Dock 2.1: robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search AN Jain Journal of computer-aided molecular design 21, 281-306, 2007	668	2007
Hammerhead: fast, fully automated docking of flexible ligands to protein binding sites W Welch, J Ruppert, AN Jain Chemistry & biology 3 (6), 449-462, 1996	494	1996
Hidden Markov models approach to the analysis of array CGH data J Fridlyand, AM Snijders, D Pinkel, DG Albertson, AN Jain Journal of multivariate analysis 90 (1), 132-153, 2004	468	2004
Fully automatic quantification of microarray image data AN Jain, TA Tokuyasu, AM Snijders, R Segraves, DG Albertson, D Pinkel Genome research 12 (2), 325-332, 2002	459	2002
Recommendations for evaluation of computational methods AN Jain, A Nicholls Journal of computer-aided molecular design 22, 133-139, 2008	421	2008
Breast tumor copy number aberration phenotypes and genomic instability J Fridlyand, AM Snijders, B Ylstra, H Li, A Olshen, R Segraves, S Dairkee, ... BMC cancer 6, 1-13, 2006	364	2006
Scoring functions for protein-ligand docking AN Jain Current Protein and Peptide Science 7 (5), 407-420, 2006	345	2006
Molecular shape and medicinal chemistry: a perspective A Nicholls, GB McGaughey, RP Sheridan, AC Good, G Warren, M Mathieu, ... Journal of medicinal chemistry 53 (10), 3862-3886, 2010	331	2010
Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors JA Veltman, J Fridlyand, S Pejavar, AB Olshen, JE Korkola, S DeVries, ... Cancer research 63 (11), 2872-2880, 2003	312	2003
Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway PP Massion, WL Kuo, D Stokoe, AB Olshen, PA Treseler, K Chin, C Chen, ... Cancer research 62 (13), 3636-3640, 2002	284	2002
Surflex-Dock: Docking benchmarks and real-world application R Spitzer, AN Jain Journal of computer-aided molecular design 26, 687-699, 2012	281	2012
Automatic identification and representation of protein binding sites for molecular docking J Ruppert, W Welch, AN Jain Protein Science 6 (3), 524-533, 1997	257	1997
Compass: predicting biological activities from molecular surface properties. Performance comparisons on a steroid benchmark AN Jain, K Koile, D Chapman Journal of Medicinal Chemistry 37 (15), 2315-2327, 1994	256	1994
High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization K Nakao, KR Mehta, J Fridlyand, DH Moore, AN Jain, A Lafuente, ... Carcinogenesis 25 (8), 1345-1357, 2004	249	2004
Ligand-based structural hypotheses for virtual screening AN Jain Journal of medicinal chemistry 47 (4), 947-961, 2004	238	2004

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