| Integrated genome browser: visual analytics platform for genomics NH Freese, DC Norris, AE Loraine Bioinformatics 32 (14), 2089-2095, 2016 | 373 | 2016 |
| The Arabidopsis transcription factor AINTEGUMENTA orchestrates patterning genes and auxin signaling in the establishment of floral growth and form BA Krizek, IC Blakley, YY Ho, N Freese, AE Loraine The Plant Journal 103 (2), 752-768, 2020 | 50 | 2020 |
| An ‘eFP‐Seq Browser’for visualizing and exploring RNA sequencing data A Sullivan, PK Purohit, NH Freese, A Pasha, E Esteban, J Waese, A Wu, ... The Plant Journal 100 (3), 641-654, 2019 | 44 | 2019 |
| Genome-wide association mapping and identification of candidate genes for the rumpless and ear-tufted traits of the Araucana chicken RE Noorai, NH Freese, LM Wright, SC Chapman, LA Clark PloS one 7 (7), e40974, 2012 | 41 | 2012 |
| AINTEGUMENTA and AINTEGUMENTA-LIKE6 directly regulate floral homeotic, growth, and vascular development genes in young Arabidopsis flowers BA Krizek, AT Bantle, JM Heflin, H Han, NH Freese, AE Loraine Journal of Experimental Botany 72 (15), 5478-5493, 2021 | 25 | 2021 |
| A novel gain-of-function mutation of the proneural IRX1 and IRX2 genes disrupts axis elongation in the Araucana rumpless chicken NH Freese, BA Lam, M Staton, A Scott, SC Chapman PloS one 9 (11), e112364, 2014 | 25 | 2014 |
| ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins T Mall, J Eckstein, D Norris, H Vora, NH Freese, AE Loraine Bioinformatics 32 (16), 2499-2501, 2016 | 13 | 2016 |
| Sp6/Epiprofin is a master regulator in the developing tooth CS Rhodes, Y Yoshitomi, PD Burbelo, NH Freese, T Nakamura, Y Chiba, ... Biochemical and biophysical research communications 581, 89-95, 2021 | 11 | 2021 |
| Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR AD Estrada, NH Freese, IC Blakley, AE Loraine PeerJ 3, e919, 2015 | 11 | 2015 |
| Discovery of genomic variations by whole-genome resequencing of the North American Araucana chicken RE Noorai, V Shankar, NH Freese, CM Gregorski, SC Chapman PLoS One 14 (12), e0225834, 2019 | 9 | 2019 |
| Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing NH Freese, AR Estrada, IC Blakley, J Duan, AE Loraine Plant Direct 3 (5), e00136, 2019 | 2 | 2019 |
| Genomic targets of HOP2 are enriched for features found at recombination hotspots J Daradur, M Kesserwan, NH Freese, AE Loraine, CD Riggs bioRxiv, 2023 | | 2023 |
| BioViz Connect: Web Application Linking CyVerse Cloud Resources to Genomic Visualization in the Integrated Genome Browser K Raveendran, NH Freese, C Kintali, S Tiwari, P Bole, C Dias, AE Loraine Frontiers in Bioinformatics 2, 764619, 2022 | | 2022 |
| Integrated Genome Browser App Store S Shanbhag, R Patil, N Zahara, C Shetty, R Weidenhammer, S Watharkar, ... Bioinformatics 38 (8), 2348-2349, 2022 | | 2022 |
| cited. BA Krizek, AT Bantle, JM Heflin, H Han, NH Freese, AE Loraine | | 2021 |
| AINTEGUMENTA and AINTEGUMENTA-LIKE6 directly regulate floral homeotic and growth genes in young flowers BA Krizek, AT Bantle, JM Heflin, H Han, NH Freese, AE Loraine bioRxiv, 2020.12. 22.424043, 2020 | | 2020 |
| Whole genome bisulfite sequencing of Medicago truncatula A17 wild type and lss mutants NH Freese, EL Schnabel, JA Frugoli BMC Research Notes 13, 1-3, 2020 | | 2020 |
| ProtAnnot: visualizing effects of alternative splicing and transcription on protein sequence and function in a genome browser T Mall, J Eckstein, D Norris, H Vora, N Freese, AE Loraine bioRxiv, 025924, 2015 | | 2015 |
| A novel gain of function of the IRX1 and IRX2 genes disrupts axis elongation in the Araucana rumpless chicken NH Freese Clemson University, 2013 | | 2013 |
| Premature downregulation of Tbx6 within the tailbud alters cell fates and leads to premature termination of axial elongation NH Freese, A Scott, S Chapman Developmental Biology 1 (356), 138, 2011 | | 2011 |
