| AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest P Bhadra, J Yan, J Li, S Fong, SWI Siu Scientific reports 8 (1), 1697, 2018 | 220 | 2018 |
| Deep-AmPEP30: improve short antimicrobial peptides prediction with deep learning J Yan, P Bhadra, A Li, P Sethiya, L Qin, HK Tai, KH Wong, SWI Siu Molecular Therapy-Nucleic Acids 20, 882-894, 2020 | 165 | 2020 |
| TNF receptor type II as an emerging drug target for the treatment of cancer, autoimmune diseases, and graft-versus-host disease: current perspectives and in silico search for … F Shaikh, J He, P Bhadra, X Chen, SWI Siu Frontiers in Immunology 9, 360547, 2018 | 19 | 2018 |
| Refined Empirical Force Field to Model Protein–Self-Assembled Monolayer Interactions Based on AMBER14 and GAFF P Bhadra, SWI Siu Langmuir 35 (29), 9622-9633, 2019 | 17 | 2019 |
| Mycolactone enhances the Ca2+ leak from endoplasmic reticulum by trapping Sec61 translocons in a Ca2+ permeable state P Bhadra, S Dos Santos, I Gamayun, T Pick, C Neumann, J Ogbechi, ... Biochemical journal 478 (22), 4005-4024, 2021 | 15 | 2021 |
| How does Sec63 affect the conformation of Sec61 in yeast? P Bhadra, L Yadhanapudi, K Römisch, V Helms PLOS Computational Biology 17 (3), e1008855, 2021 | 15 | 2021 |
| Effect of concentration, chain length, hydrophobicity, and an external electric field on the growth of mixed alkanethiol self-assembled monolayers: A molecular dynamics study P Bhadra, SWI Siu Langmuir 37 (5), 1913-1924, 2021 | 15 | 2021 |
| Comparison of biomolecular force fields for alkanethiol self-assembled monolayer simulations P Bhadra, SWI Siu The Journal of Physical Chemistry C 121 (47), 26340-26349, 2017 | 14 | 2017 |
| Phenylbutyrate rescues the transport defect of the Sec61α mutations V67G and T185A for renin M Sicking, M Živná, P Bhadra, V Barešová, A Tirincsi, D Hadzibeganovic, ... Life Science Alliance 5 (4), 2022 | 13 | 2022 |
| Quantitative proteomics and differential protein abundance analysis after depletion of putative mRNA receptors in the ER membrane of human cells identifies novel aspects of … P Bhadra, S Schorr, M Lerner, D Nguyen, J Dudek, F Förster, V Helms, ... Molecules 26 (12), 3591, 2021 | 11 | 2021 |
| De novo inference of protein function from coarse‐grained dynamics P Bhadra, D Pal Proteins: Structure, Function, and Bioinformatics 82 (10), 2443-2454, 2014 | 10 | 2014 |
| Signal peptide features determining the substrate specificities of targeting and translocation components in human ER protein import S Lang, D Nguyen, P Bhadra, M Jung, V Helms, R Zimmermann Frontiers in physiology 13, 833540, 2022 | 9 | 2022 |
| Molecular modeling of signal peptide recognition by eukaryotic Sec complexes P Bhadra, V Helms International Journal of Molecular Sciences 22 (19), 10705, 2021 | 7 | 2021 |
| Molecular Dynamics Information Improves cis-Peptide-Based Function Annotation of Proteins S Das, P Bhadra, S Ramakumar, D Pal Journal of Proteome Research 16 (8), 2936-2946, 2017 | 3 | 2017 |
| Pipeline for inferring protein function from dynamics using coarse-grained molecular mechanics forcefield P Bhadra, D Pal Computers in Biology and Medicine 83, 134-142, 2017 | 3 | 2017 |
| Effect of Sec62 on the conformation of the Sec61 channel in yeast P Bhadra, K Römisch, V Helms Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (12), 184050, 2022 | 1 | 2022 |
| Synthesis, Biological Evaluation and Docking Studies of Ring-Opened Analogues of Ipomoeassin F S O’Keefe, P Bhadra, KB Duah, G Zong, L Tenay, L Andrews, ... Molecules 27 (14), 4419, 2022 | 1 | 2022 |
| The conserved membrane-proximal domain of Sbh1/Sec61β guides signal peptides into the Sec61 channel L Yadhanapudi, P Bhadra, G Barbieri, M Jung, M Lommel, V Helms, ... bioRxiv, 2024.03. 12.584615, 2024 | | 2024 |
| frontiers Frontiers in Physiology 2022 published: 11 July REVIEW AL Karamyshev, JM Herrmann, TM Buck, S Lang, R Zimmermann, ... Targeting Signals in Protein Trafficking and Transport, 72, 2023 | | 2023 |
| Prediction of Activators for Pathogen Sensing Receptors using Machine Learning PM Dash, P Bhadra, V Helms, B Bufe APPLICATION IN LIFE SCIENCES AND BEYOND, 11, 2021 | | 2021 |
Shirley W. I. SiuMacao Polytechnic UniversityVerified email at mpu.edu.mo
