| Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA KG Paulson, V Voillet, MS McAfee, DS Hunter, FD Wagener, M Perdicchio, ... Nature communications 9 (1), 3868, 2018 | 234 | 2018 |
| Clonal tracking of rhesus macaque hematopoiesis highlights a distinct lineage origin for natural killer cells C Wu, B Li, R Lu, SJ Koelle, Y Yang, A Jares, AE Krouse, M Metzger, ... Cell stem cell 14 (4), 486-499, 2014 | 187 | 2014 |
| Quantitative stability of hematopoietic stem and progenitor cell clonal output in rhesus macaques receiving transplants SJ Koelle, DA Espinoza, C Wu, J Xu, R Lu, B Li, RE Donahue, CE Dunbar Blood, The Journal of the American Society of Hematology 129 (11), 1448-1457, 2017 | 63 | 2017 |
| Clonal expansion and compartmentalized maintenance of rhesus macaque NK cell subsets C Wu, DA Espinoza, SJ Koelle, D Yang, L Truitt, H Schlums, BA Lafont, ... Science immunology 3 (29), eaat9781, 2018 | 48 | 2018 |
| The impact of aging on primate hematopoiesis as interrogated by clonal tracking KR Yu, DA Espinoza, C Wu, L Truitt, TH Shin, S Chen, X Fan, IM Yabe, ... Blood, The Journal of the American Society of Hematology 131 (11), 1195-1205, 2018 | 44 | 2018 |
| Geographic clonal tracking in macaques provides insights into HSPC migration and differentiation C Wu, DA Espinoza, SJ Koelle, EL Potter, R Lu, B Li, D Yang, X Fan, ... Journal of Experimental Medicine 215 (1), 217-232, 2018 | 34 | 2018 |
| A regression approach for explaining manifold embedding coordinates M Meila, S Koelle, H Zhang stat 1050, 29, 2018 | 14 | 2018 |
| Statistical inference for partially observed branching processes with application to cell lineage tracking of in vivo hematopoiesis J Xu, S Koelle, P Guttorp, C Wu, C Dunbar, JL Abkowitz, VN Minin The Annals of Applied Statistics 13 (4), 2091-2119, 2019 | 11 | 2019 |
| Barcoding of macaque hematopoietic stem and progenitor cells: a robust platform to assess vector genotoxicity IM Yabe, LL Truitt, DA Espinoza, C Wu, S Koelle, S Panch, MAF Corat, ... Molecular Therapy-Methods & Clinical Development 11, 143-154, 2018 | 11 | 2018 |
| Interrogation of clonal tracking data using barcodetrackR DA Espinoza, RD Mortlock, SJ Koelle, C Wu, CE Dunbar Nature computational science 1 (4), 280-289, 2021 | 10 | 2021 |
| Statistical inference in partially observed stochastic compartmental models with application to cell lineage tracking of in vivo hematopoiesis J Xu, S Koelle, P Guttorp, C Wu, CE Dunbar, JL Abkowitz, VN Minin arXiv preprint arXiv:1610.07550, 2016 | 8 | 2016 |
| Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA. Nat. Commun. 9, 3868 KG Paulson, V Voillet, MS McAfee, DS Hunter, FD Wagener, M Perdicchio, ... | 7 | 2018 |
| Modern manifold learning methods for md data–a step by step procedural overview YC Chen, J McQueen, SJ Koelle, M Meila, S Chmiela, A Tkatchenko | 6 | 2019 |
| Manifold coordinates with physical meaning SJ Koelle, H Zhang, M Meila, YC Chen Journal of Machine Learning Research 23 (133), 1-57, 2022 | 5 | 2022 |
| Tangent space least adaptive clustering J Buenfil, SJ Koelle, M Meila ICML 2021 Workshop on Unsupervised Reinforcement Learning, 2021 | 5 | 2021 |
| Comparative engraftment and clonality of macaque HSPCs expanded on human umbilical vein endothelial cells versus non-expanded cells SK Srivastava, LL Truitt, C Wu, A Glaser, DJ Nolan, M Ginsberg, ... Molecular Therapy Methods & Clinical Development 20, 703-715, 2021 | 2 | 2021 |
| Manifold coordinates with physical meaning S Koelle, H Zhang, M Meila, YC Chen arXiv preprint arXiv:1811.11891, 2018 | 2 | 2018 |
| Dictionary-based manifold learning H Zhang, S Koelle, M Meila arXiv preprint arXiv:2302.00263, 2023 | 1 | 2023 |
| barcodetrackR: an R package for the interrogation of clonal tracking data DA Espinoza, RD Mortlock, SJ Koelle, C Wu, CE Dunbar bioRxiv, 2020.07. 23.212787, 2020 | 1 | 2020 |
| Supplement to “Statistical inference for partially observed branching processes with application to cell lineage tracking of in vivo hematopoiesis.” J Xu, S Koelle, P Guttorp, C Wu, C Dunbar, JL Abkowitz, VN Minin DOI, 2019 | 1 | 2019 |
