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Denis Jacob Machado
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Phylogenetic systematics of dart-poison frogs and their relatives revisited (Anura: Dendrobatoidea)
T Grant, M Rada, M Anganoy-Criollo, A Batista, PH Dias, AM Jeckel, ...
South American Journal of Herpetology 12 (s1), 2017
1682017
Genome skimming is a low-cost and robust strategy to assemble complete mitochondrial genomes from ethanol preserved specimens in biodiversity studies
B Trevisan, DMC Alcantara, DJ Machado, FPL Marques, DJG Lahr
PeerJ 7, e7543, 2019
552019
YBYRÁ facilitates comparison of large phylogenetic trees
DJ Machado
BMC bioinformatics 16, 1-4, 2015
432015
Predictions of the SARS-CoV-2 omicron variant (B. 1.1. 529) spike protein receptor-binding domain structure and neutralizing antibody interactions
CT Ford, D Jacob Machado, DA Janies
Frontiers in Virology 2, 2, 2022
412022
The phylogeny of Dendropsophini (Anura: Hylidae: Hylinae)
VGD Orrico, T Grant, J Faivovich, M Rivera‐Correa, MA Rada, ML Lyra, ...
Cladistics 37 (1), 73-105, 2021
382021
Mitogenome assembly from genomic multiplex libraries: comparison of strategies and novel mitogenomes for five species of frogs
DJ Machado, ML Lyra, T Grant
Molecular Ecology Resources 16 (3), 686-693, 2016
292016
Biogenesis of circular RNAs and their role in cellular and molecular phenotypes of neurological disorders
BS Guerra, J Lima, BHS Araujo, LB Torres, JCC Santos, DJS Machado, ...
Seminars in Cell & Developmental Biology 114, 1-10, 2021
282021
Active Notch signaling is required for arm regeneration in a brittle star
V Mashanov, J Akiona, M Khoury, J Ferrier, R Reid, DJ Machado, ...
PloS one 15 (5), e0232981, 2020
212020
The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida)
JP Lin, MH Tsai, A Kroh, A Trautman, DJ Machado, LY Chang, R Reid, ...
Genomics 112 (2), 1686-1693, 2020
182020
Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐2
DJ Machado, R Scott, S Guirales, DA Janies
Cladistics 37 (5), 461, 2021
172021
A new strategy to infer circularity applied to four new complete frog mitogenomes
D Jacob Machado, D Janies, C Brouwer, T Grant
Ecology and Evolution 8 (8), 4011-4018, 2018
172018
Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and …
D Jacob Machado, R Scott, S Guirales, DA Janies
Cladistics 37 (5), 461-488, 2021
102021
FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae
A de Bernadi Schneider, D Jacob Machado, S Guirales, DA Janies
Viruses 12 (8), 892, 2020
82020
Evidence of absence treated as absence of evidence: The effects of variation in the number and distribution of gaps treated as missing data on the results of standard maximum …
DJ Machado, S Castroviejo-Fisher, T Grant
Molecular phylogenetics and evolution 154, 106966, 2021
72021
Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research
V Mashanov, DJ Machado, R Reid, C Brouwer, J Kofsky, DA Janies
BMC genomics 23 (1), 574, 2022
6*2022
Fundamentals of genomic epidemiology, lessons learned from the coronavirus disease 2019 (COVID-19) pandemic, and new directions
DJ Machado, RA White, J Kofsky, DA Janies
Antimicrobial Stewardship & Healthcare Epidemiology 1 (1), e60, 2021
52021
A subterminal growth zone at arm tip likely underlies life-long indeterminate growth in brittle stars
V Mashanov, L Whaley, K Davis, T Heinzeller, DJ Machado, RW Reid, ...
Frontiers in Zoology 19 (1), 15, 2022
42022
Phylogenetic systematics of dart-poison frogs and their relatives revisited (Anura: Dendrobatoidea) South American Journal of Herpetology. 2017; 12: 1–90. doi: 10.2994
T Grant, M Rada, M Anganoy-Criollo, A Batista, PH Dias, AM Jeckel, ...
SAJH-D-17-00017.1.[CrossRef][Google Scholar], 0
4
Echinoderm radial glia in adult cell renewal, indeterminate growth, and regeneration
V Mashanov, S Ademiluyi, D Jacob Machado, R Reid, D Janies
Frontiers in Neural Circuits 17, 1258370, 2023
32023
Comparative characterization of mitogenomes from five orders of cestodes (Eucestoda: tapeworms)
B Trevisan, D Jacob Machado, DJG Lahr, FPL Marques
Frontiers in Genetics 12, 788871, 2021
32021
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Articles 1–20