| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 368 | 2019 |
| The balancing act of intrinsically disordered proteins: enabling functional diversity while minimizing promiscuity M Macossay-Castillo, G Marvelli, M Guharoy, A Jain, D Kihara, P Tompa, ... Journal of molecular biology 431 (8), 1650-1670, 2019 | 49 | 2019 |
| Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences A Jain, D Kihara Bioinformatics 35 (5), 753-759, 2019 | 37 | 2019 |
| Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction A Jain, G Terashi, Y Kagaya, SR Maddhuri Venkata Subramaniya, ... Scientific Reports 11 (1), 7574, 2021 | 27* | 2021 |
| NNTox: gene ontology-based protein toxicity prediction using neural network A Jain, D Kihara Scientific reports 9 (1), 17923, 2019 | 19 | 2019 |
| Protein contact map refinement for improving structure prediction using generative adversarial networks SR Maddhuri Venkata Subramaniya, G Terashi, A Jain, Y Kagaya, ... Bioinformatics, 2021 | 13* | 2021 |
| Protein contact map refinement for improving structure prediction using generative adversarial networks SRMV Subramaniya, G Terashi, A Jain, Y Kagaya, D Kihara Bioinformatics 37 (19), 3168, 2021 | 12 | 2021 |
| A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes H Toh, C Yang, G Formenti, K Raja, L Yan, A Tracey, W Chow, K Howe, ... BMC biology 20 (1), 245, 2022 | 11 | 2022 |
| Identification of moonlighting proteins in genomes using text mining techniques A Jain, H Gali, D Kihara Proteomics 18 (21-22), 1800083, 2018 | 10 | 2018 |
| ContactPFP: protein function prediction using predicted contact information Y Kagaya, ST Flannery, A Jain, D Kihara Frontiers in bioinformatics 2, 896295, 2022 | 8 | 2022 |
| Prediction of protein group function by iterative classification on functional relevance network IK Khan, A Jain, R Rawi, H Bensmail, D Kihara Bioinformatics 35 (8), 1388-1394, 2019 | 8 | 2019 |
| Multimodal conditionality for natural language generation M Sollami, A Jain arXiv preprint arXiv:2109.01229, 2021 | 7 | 2021 |
| A high-quality blue whale genome, segmental duplications, and historical demography YV Bukhman, PA Morin, S Meyer, LF Chu, JK Jacobsen, ... Molecular Biology and Evolution 41 (3), msae036, 2024 | 5 | 2024 |
| Systems and methods of natural language generation for electronic catalog descriptions M Sollami, J Aashish US Patent App. 17/067,000, 2022 | 1 | 2022 |
| Machine Learning Approaches Towards Protein Structure and Function Prediction A Jain Purdue University, 2021 | 1 | 2021 |
| One-to-many automatic content generation M Sollami, S Rohde, AM Ross, DJ Woodward, J Lundin, OW Schoppe, ... US Patent 11,868,790, 2024 | | 2024 |
| Evaluating Transferability in Retrieval Tasks: An Approach Using MMD and Kernel Methods M Dai, AH Raffiee, A Jain, J Correa Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern …, 2024 | | 2024 |
| Automatic Image Conversion M Sollami, S Rohde, AM Ross, DJ Woodward, J Lundin, OW Schoppe, ... US Patent App. 17/649,045, 2023 | | 2023 |
