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Takashi Nagata
Takashi Nagata
Verified email at kyoto-u.ac.jp
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Mouse-Musashi-1, a neural RNA-binding protein highly enriched in the mammalian CNS stem cell
S Sakakibara, T Imai, K Hamaguchi, M Okabe, J Aruga, K Nakajima, ...
Developmental biology 176 (2), 230-242, 1996
6621996
Direct evidence for α ether linkage between lignin and carbohydrates in wood cell walls
H Nishimura, A Kamiya, T Nagata, M Katahira, T Watanabe
Scientific reports 8 (1), 6538, 2018
2452018
Structure, interaction and real‐time monitoring of the enzymatic reaction of wild‐type APOBEC3G
A Furukawa, T Nagata, A Matsugami, Y Habu, R Sugiyama, F Hayashi, ...
The EMBO journal 28 (4), 440-451, 2009
1492009
Immunoglobulin motif DNA recognition and heterodimerization of the PEBP2/CBF Runt domain
T Nagata, V Gupta, D Sorce, WY Kim, A Sali, BT Chait, K Shigesada, Y Ito, ...
nature structural biology 6 (7), 615-619, 1999
1381999
Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
T Ohyama, T Nagata, K Tsuda, N Kobayashi, T Imai, H Okano, ...
Nucleic acids research 40 (7), 3218-3231, 2012
1092012
Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition
T Hayashi, H Oshima, T Mashima, T Nagata, M Katahira, M Kinoshita
Nucleic acids research 42 (11), 6861-6875, 2014
822014
Anti-prion activity of an RNA aptamer and its structural basis
T Mashima, F Nishikawa, YO Kamatari, H Fujiwara, M Saimura, T Nagata, ...
Nucleic acids research 41 (2), 1355-1362, 2013
812013
Structures of the first and second double‐stranded RNA‐binding domains of human TAR RNA‐binding protein
S Yamashita, T Nagata, M Kawazoe, C Takemoto, T Kigawa, P Güntert, ...
Protein Science 20 (1), 118-130, 2011
782011
Structure, backbone dynamics and interactions with RNA of the C-terminal RNA-binding domain of a mouse neural RNA-binding protein, Musashi1
T Nagata, R Kanno, Y Kurihara, S Uesugi, T Imai, S Sakakibara, H Okano, ...
Journal of molecular biology 287 (2), 315-330, 1999
701999
Molecular landscape of the ribosome pre-initiation complex during mRNA scanning: structural role for eIF3c and its control by eIF5
E Obayashi, RE Luna, T Nagata, P Martin-Marcos, H Hiraishi, CR Singh, ...
Cell reports 18 (11), 2651-2663, 2017
592017
Structure and interactions with RNA of the N-terminal UUAG-specific RNA-binding domain of hnRNP D0
T Nagata, Y Kurihara, G Matsuda, J Saeki, T Kohno, Y Yanagida, ...
Journal of molecular biology 287 (2), 221-237, 1999
591999
Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA
M Katahira, Y Miyanoiri, Y Enokizono, G Matsuda, T Nagata, F Ishikawa, ...
Journal of molecular biology 311 (5), 973-988, 2001
562001
Functional mutagenesis of AML1/RUNX1 and PEBP2β/CBFβ define distinct, non-overlapping sites for DNA recognition and heterodimerization by the Runt domain
T Nagata, MH Werner
Journal of molecular biology 308 (2), 191-203, 2001
532001
The RRM domain of poly (A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition
T Nagata, S Suzuki, R Endo, M Shirouzu, T Terada, M Inoue, T Kigawa, ...
Nucleic acids research 36 (14), 4754-4767, 2008
522008
The first successful observation of in-cell NMR signals of DNA and RNA in living human cells
Y Yamaoki, A Kiyoishi, M Miyake, F Kano, M Murata, T Nagata, M Katahira
Physical Chemistry Chemical Physics 20 (5), 2982-2985, 2018
482018
Solution structures of the trihelix DNA‐binding domains of the wild‐type and a phosphomimetic mutant of Arabidopsis GT‐1: Mechanism for an increase in DNA …
T Nagata, E Niyada, N Fujimoto, Y Nagasaki, K Noto, Y Miyanoiri, ...
Proteins: Structure, Function, and Bioinformatics 78 (14), 3033-3047, 2010
412010
Origin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, musashi1, as revealed by comparison of their …
Y Miyanoiri, H Kobayashi, T Imai, M Watanabe, T Nagata, S Uesugi, ...
Journal of Biological Chemistry 278 (42), 41309-41315, 2003
402003
Structural Insight into the Recognition of r (UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA
R Iwaoka, T Nagata, K Tsuda, T Imai, H Okano, N Kobayashi, M Katahira
Molecules 22 (7), 1207, 2017
352017
Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA
K Kondo, T Mashima, T Oyoshi, R Yagi, R Kurokawa, N Kobayashi, ...
Scientific reports 8 (1), 2864, 2018
322018
Unusual thermal disassembly of the SPFH domain oligomer from Pyrococcus horikoshii
Y Kuwahara, S Unzai, T Nagata, Y Hiroaki, H Yokoyama, I Matsui, ...
Biophysical journal 97 (7), 2034-2043, 2009
292009
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