| An in vitro human segmentation clock model derived from embryonic stem cells LF Chu, D Mamott, Z Ni, R Bacher, C Liu, S Swanson, C Kendziorski, ... Cell reports 28 (9), 2247-2255. e5, 2019 | 57 | 2019 |
| Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments R Bacher, N Leng, LF Chu, Z Ni, JA Thomson, C Kendziorski, R Stewart BMC bioinformatics 19, 1-10, 2018 | 29 | 2018 |
| Rare penetrant mutations confer severe risk of common diseases PP Fiziev, J McRae, JC Ulirsch, JS Dron, T Hamp, Y Yang, P Wainschtein, ... Science 380 (6648), eabo1131, 2023 | 22 | 2023 |
| SpotClean adjusts for spot swapping in spatial transcriptomics data Z Ni, A Prasad, S Chen, RB Halberg, LM Arkin, BA Drolet, MA Newton, ... Nature Communications 13 (1), 2971, 2022 | 22 | 2022 |
| CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data Z Ni, S Chen, J Brown, C Kendziorski Genome biology 21, 1-10, 2020 | 17 | 2020 |
| Normalization by distributional resampling of high throughput single-cell RNA-sequencing data J Brown, Z Ni, C Mohanty, R Bacher, C Kendziorski Bioinformatics 37 (22), 4123-4128, 2021 | 15 | 2021 |
| CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets MN Bernstein, Z Ni, M Collins, ME Burkard, C Kendziorski, R Stewart BMC bioinformatics 22, 1-9, 2021 | 13 | 2021 |
| The Anna Karenina model of β-cell maturation in development and their dedifferentiation in type 1 and type 2 diabetes SD Nimkulrat, MN Bernstein, Z Ni, J Brown, C Kendziorski, B Blum Diabetes 70 (9), 2058-2066, 2021 | 13 | 2021 |
| SpatialCorr identifies gene sets with spatially varying correlation structure MN Bernstein, Z Ni, A Prasad, J Brown, C Mohanty, R Stewart, ... Cell Reports Methods 2 (12), 2022 | 7 | 2022 |
| Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models RJ Millikin, K Raja, J Steill, C Lock, X Tu, I Ross, LC Tsoi, F Kuusisto, Z Ni, ... BMC bioinformatics 24 (1), 412, 2023 | 4* | 2023 |
| Efficient derivation of transgene-free porcine induced pluripotent stem cells enables in vitro modeling of species-specific developmental timing JV Conrad, S Meyer, PS Ramesh, JA Neira, M Rusteika, D Mamott, ... Stem Cell Reports 18 (12), 2328-2343, 2023 | 2 | 2023 |
| Network analyses: Inhibition of androgen receptor signaling reduces inflammation in the lung through AR-MAF-IL6 signaling axes AR Wang, AM Baschnagel, Z Ni, SR Brennan, HK Newton, D Buehler, ... Genes & Diseases 11 (3), 101072, 2024 | | 2024 |
| Genomic analysis of human brain metastases treated with stereotactic radiosurgery reveals unique signature based on treatment failure JM Shireman, Q White, Z Ni, C Mohanty, Y Cai, L Zhao, N Agrawal, ... Iscience 27 (4), 2024 | | 2024 |
| Targeted inhibition of BET proteins in HPV-16 associated head and neck squamous cell carcinoma reveals heterogeneous transcription response A Rao, Z Ni, D Suresh, C Mohanty, AR Wang, DL Lee, KP Nickel, ... bioRxiv, 2023 | | 2023 |
| Progressive horizon learning: Adaptive long term optimization for personalized recommendation C Yi, D Zumwalt, Z Ni, S Chakrabarti Proceedings of the 17th ACM Conference on Recommender Systems, 940-946, 2023 | | 2023 |
| Inhibition of Androgen Receptor Signaling Reduces Inflammation in the Lung with SARS-CoV-2 Infection Through Dampening IL6 Signaling AR Wang, AM Baschnagel, Z Ni, SR Brennan, HK Newton, D Buehler, ... Available at SSRN 4161717, 2022 | | 2022 |
| Augmenting genomic instability in HPV head and neck cancer tumors through combination bromodomain and extra-terminal (BET) proteins inhibition and radiation treatments A Rao, Z Ni, A Wang, D Suresh, C Mohanty, C Kendziorski, G Iyer Cancer Research 82 (12_Supplement), 1503-1503, 2022 | | 2022 |
| Statistical Methods for Improving Data Quality in Modern RNA Sequencing Experiments Z Ni The University of Wisconsin-Madison, 2022 | | 2022 |
Christina KendziorskiProfessor of Biostatistics and Medical Informatics, University of WisconsinVerified email at biostat.wisc.edu
