Follow
Nadine Töpfer
Title
Cited by
Cited by
Year
Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus pluvialis
L Recht, N Töpfer, A Batushansky, N Sikron, Y Gibon, A Fait, Z Nikoloski, ...
Journal of Biological Chemistry 289 (44), 30387-30403, 2014
1172014
Integration of metabolomics data into metabolic networks
N Töpfer, S Kleessen, Z Nikoloski
Frontiers in plant science 6, 49, 2015
1052015
The PhytoClust tool for metabolic gene clusters discovery in plant genomes
N Töpfer, LM Fuchs, A Aharoni
Nucleic Acids Research 45 (12), 7049-7063, 2017
922017
Label‐free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development
J Szymanski, Y Levin, A Savidor, D Breitel, L Chappell‐Maor, U Heinig, ...
The Plant Journal 90 (2), 396-417, 2017
702017
Integration of genome-scale modeling and transcript profiling reveals metabolic pathways underlying light and temperature acclimation in Arabidopsis
N Töpfer, C Caldana, S Grimbs, L Willmitzer, AR Fernie, Z Nikoloski
The Plant Cell 25 (4), 1197-1211, 2013
502013
Alternative Crassulacean Acid Metabolism Modes Provide Environment-Specific Water-Saving Benefits in a Leaf Metabolic Model
N Töpfer, T Braam, S Shameer, RG Ratcliffe, LJ Sweetlove
The Plant Cell 32 (12), 3689-3705, 2020
492020
iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models
M Sajitz-Hermstein, N Töpfer, S Kleessen, AR Fernie, Z Nikoloski
Bioinformatics 32 (17), i755-i762, 2016
342016
Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli
N Töpfer, S Jozefczuk, Z Nikoloski
BMC Systems Biology 6 (1), 1-10, 2012
302012
Advances in Flux Balance Analysis by Integrating Machine Learning and Mechanism-based Models
A Sahu, MA Blätke, JJ Szymański, N Töpfer
Computational and Structural Biotechnology Journal, 2021
292021
Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses
N Töpfer, F Scossa, A Fernie, Z Nikoloski
PLoS Comput Biol 10 (6), e1003656, 2014
202014
Integration of Plant Metabolomics Data with Metabolic Networks: Progresses and Challenges
N Töpfer, SMD Seaver, A Aharoni
Plant Metabolomics, 297-310, 2018
162018
Environment-coupled models of leaf metabolism
N Töpfer
Biochemical Society Transactions 49 (1), 119-129, 2021
82021
Large-scale modeling provides insights into Arabidopsis's acclimation to changing light and temperature conditions
N Töpfer, Z Niokoloski
Plant signaling & behavior 8 (9), 1197-211, 2013
72013
CobraMod: A pathway-centric curation tool for constraint-based metabolic models
S Camborda, JN Weder, N Töpfer
Bioinformatics, 2022
42022
CAM emerges in a leaf metabolic model under water-saving constraints in different environments
N Töpfer, T Braam, S Shameer, RG Ratcliffe, LJ Sweetlove
bioRxiv, 2020
22020
Towards Multiscale Modeling to Predict Diatom Metabolites Production for Biofuels and High-Value Compounds
M Branco-Vieira, NS Caetano, ARJ Lima, N Töpfer
International Conference on Energy and Environment Research, 325-337, 2023
2023
Optimization-based Approaches for Analyzing Metabolic Adjustment to Changing Environmental Conditions
N Töpfer
2014
The system can't perform the operation now. Try again later.
Articles 1–17