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Cynthia Kalita
Cynthia Kalita
Dana Farber Cancer Institute
Verified email at dfci.harvard.edu
Title
Cited by
Cited by
Year
High-throughput allele-specific expression across 250 environmental conditions
GA Moyerbrailean, AL Richards, D Kurtz, CA Kalita, GO Davis, CT Harvey, ...
Genome research 26 (12), 1627-1638, 2016
1172016
Which genetics variants in DNase-Seq footprints are more likely to alter binding?
GA Moyerbrailean, CA Kalita, CT Harvey, X Wen, F Luca, R Pique-Regi
PLoS genetics 12 (2), e1005875, 2016
682016
Functional dynamic genetic effects on gene regulation are specific to particular cell types and environmental conditions
AS Findley, A Monziani, AL Richards, K Rhodes, MC Ward, CA Kalita, ...
Elife 10, e67077, 2021
452021
High-throughput characterization of genetic effects on DNA–protein binding and gene transcription
CA Kalita, CD Brown, A Freiman, J Isherwood, X Wen, R Pique-Regi, ...
Genome research 28 (11), 1701-1708, 2018
382018
QuASAR-MPRA: accurate allele-specific analysis for massively parallel reporter assays
CA Kalita, GA Moyerbrailean, C Brown, X Wen, F Luca, R Pique-Regi
Bioinformatics 34 (5), 787-794, 2018
312018
Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor …
R Romero, AL Tarca, P Chaemsaithong, J Miranda, T Chaiworapongsa, ...
The Journal of Maternal-Fetal & Neonatal Medicine 27 (14), 1397-1408, 2014
252014
Genetic determinants of chromatin reveal prostate cancer risk mediated by context-dependent gene regulation
SC Baca, C Singler, S Zacharia, JH Seo, T Morova, F Hach, Y Ding, ...
Nature genetics 54 (9), 1364-1375, 2022
212022
A signature of Neanderthal introgression on molecular mechanisms of environmental responses
AS Findley, X Zhang, C Boye, YL Lin, CA Kalita, L Barreiro, ...
PLoS Genetics 17 (9), e1009493, 2021
72021
Are all genetic variants in DNase I sensitivity regions functional?
GA Moyerbrailean, CT Harvey, CA Kalita, X Wen, F Luca, R Pique-Regi
bioRxiv, 007559, 2014
32014
DeCAF: a novel method to identify cell-type specific regulatory variants and their role in cancer risk
CA Kalita, A Gusev
Genome Biology 23 (1), 152, 2022
12022
A novel method to identify cell-type specific regulatory variants and their role in cancer risk
CA Kalita, A Gusev
bioRxiv, 2021.11. 11.468278, 2021
12021
Characterization of caffeine response regulatory variants in vascular endothelial cells
C Boye, CA Kalita, AS Findley, A Alazizi, J Wei, X Wen, R Pique-Regi, ...
Elife 13, e85235, 2024
2024
Genetic determinants of chromatin reveal prostate cancer risk mediated by context-dependent gene regulation
M Freedman, S Baca, C Singler, S Zacharia, JH Seo, T Morova, F Hach, ...
2021
High throughput characterization of genetic effects on DNA: protein binding and gene transcription
C Kalita, C Brown, A Freiman, X Wen, R Pique-Regi, F Luca
EUROPEAN JOURNAL OF HUMAN GENETICS 27, 833-834, 2019
2019
circuitSNPs: Predicting genetic effects using a Neural Network to model regulatory modules of DNase-seq footprints
AG Shanku, A Findley, C Kalita, H Shim, F Luca, R Pique-Regi
bioRxiv, 337774, 2018
2018
Validating Functional Mechanisms For Non-Coding Genetic Variants Associated With Complex Traits
CA Kalita
Wayne State University, 2018
2018
MA, USA
SC Baca, C Singler, S Zacharia, JH Seo, T Morova, F Hach, Y Ding, ...
Supplemental Material for: Which genetic variants in DNase-seq footprints are more likely to alter binding?
GA Moyerbrailean, CA Kalita, CT Harvey, X Wen, F Luca, R Pique-Regi
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