| A survey of DNA motif finding algorithms MK Das, HK Dai BMC bioinformatics 8, 1-13, 2007 | 612 | 2007 |
| A heuristic approach to determine an appropriate number of topics in topic modeling W Zhao, JJ Chen, R Perkins, Z Liu, W Ge, Y Ding, W Zou BMC bioinformatics 16, 1-10, 2015 | 405 | 2015 |
| The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies L Shi, WD Jones, RV Jensen, SC Harris, RG Perkins, FM Goodsaid, ... BMC bioinformatics 9, 1-19, 2008 | 262 | 2008 |
| Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom Z Xu, D Zhang, J Hu, X Zhou, X Ye, KL Reichel, NR Stewart, RD Syrenne, ... BMC bioinformatics 10, 1-15, 2009 | 260 | 2009 |
| Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential L Shi, W Tong, H Fang, U Scherf, J Han, RK Puri, FW Frueh, FM Goodsaid, ... BMC bioinformatics 6, 1-14, 2005 | 247 | 2005 |
| HPIDB-a unified resource for host-pathogen interactions R Kumar, B Nanduri BMC bioinformatics 11, 1-6, 2010 | 168 | 2010 |
| Evaluation of the coverage and depth of transcriptome by RNA-Seq in chickens Y Wang, N Ghaffari, CD Johnson, UM Braga-Neto, H Wang, R Chen, ... BMC bioinformatics 12, 1-7, 2011 | 161 | 2011 |
| Deep learning architectures for multi-label classification of intelligent health risk prediction A Maxwell, R Li, B Yang, H Weng, A Ou, H Hong, Z Zhou, P Gong, ... BMC bioinformatics 18, 121-131, 2017 | 157 | 2017 |
| Empirical evaluation of scoring functions for Bayesian network model selection Z Liu, B Malone, C Yuan BMC bioinformatics 13 (Suppl 15), S14, 2012 | 130 | 2012 |
| Mining FDA drug labels using an unsupervised learning technique-topic modeling H Bisgin, Z Liu, H Fang, X Xu, W Tong BMC bioinformatics 12, 1-8, 2011 | 128 | 2011 |
| Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks P Li, C Zhang, EJ Perkins, P Gong, Y Deng BMC bioinformatics 8, 1-8, 2007 | 120 | 2007 |
| A structural approach for finding functional modules from large biological networks M Mete, F Tang, X Xu, N Yuruk Bmc Bioinformatics 9, 1-14, 2008 | 112 | 2008 |
| Threshold selection in gene co-expression networks using spectral graph theory techniques AD Perkins, MA Langston BMC bioinformatics 10, 1-11, 2009 | 106 | 2009 |
| Microarray scanner calibration curves: characteristics and implications L Shi, W Tong, Z Su, T Han, J Han, RK Puri, H Fang, FW Frueh, ... BMC bioinformatics 6, 1-14, 2005 | 100 | 2005 |
| Statistical tools for transgene copy number estimation based on real-time PCR JS Yuan, J Burris, NR Stewart, A Mentewab, CN Stewart BMC bioinformatics 8, 1-12, 2007 | 95 | 2007 |
| Prediction of peptides observable by mass spectrometry applied at the experimental set level WS Sanders, SM Bridges, FM McCarthy, B Nanduri, SC Burgess BMC bioinformatics 8, 1-9, 2007 | 95 | 2007 |
| Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer Y Gusev, TD Schmittgen, M Lerner, R Postier, D Brackett BMC bioinformatics 8, 1-17, 2007 | 91 | 2007 |
| The EDKB: an established knowledge base for endocrine disrupting chemicals D Ding, L Xu, H Fang, H Hong, R Perkins, S Harris, ED Bearden, L Shi, ... BMC bioinformatics 11, 1-7, 2010 | 89 | 2010 |
| Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS) H Hong, Y Dragan, J Epstein, C Teitel, B Chen, Q Xie, H Fang, L Shi, ... BMC bioinformatics 6, 1-11, 2005 | 87 | 2005 |
| Systematic classification of non-coding RNAs by epigenomic similarity MG Dozmorov, CB Giles, KA Koelsch, JD Wren BMC bioinformatics 14, 1-12, 2013 | 85 | 2013 |
