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Vijini Mallawaarachchi
Vijini Mallawaarachchi
Research Associate at Flinders University
Verified email at flinders.edu.au - Homepage
Title
Cited by
Cited by
Year
GraphBin: refined binning of metagenomic contigs using assembly graphs
V Mallawaarachchi, A Wickramarachchi, Y Lin
Bioinformatics 36 (11), 3307-3313, 2020
672020
Managing complex workflows in bioinformatics: an interactive toolkit with gpu acceleration
A Welivita, I Perera, D Meedeniya, A Wickramarachchi, ...
IEEE transactions on nanobioscience 17 (3), 199-208, 2018
242018
MetaBCC-LR: Metagenomics Binning by Coverage and Composition for Long Reads
A Wickramarachchi, V Mallawaarachchi, V Rajan, Y Lin
28th Conf. on Intelligent Systems for Molecular Biology ISMB'20, 2020
222020
Change Detection and Notification of Webpages: A Survey
V Mallawaarachchi, L Meegahapola, R Alwis, E Nimalarathna, ...
ACM Computing Surveys 53 (1), 2020
162020
GraphBin2: refined and overlapped binning of metagenomic contigs using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
20th International Workshop on Algorithms in Bioinformatics, WABI 2020, 8, 2020
142020
Improving metagenomic binning results with overlapped bins using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
Algorithms for Molecular Biology 16, 1-18, 2021
132021
MetaCoAG: Binning metagenomic contigs via composition, coverage and assembly graphs
V Mallawaarachchi, Y Lin
International Conference on Research in Computational Molecular Biology, 70-85, 2022
122022
The human gut virome: composition, colonization, interactions, and impacts on human health
E Pargin, MJ Roach, A Skye, V Mallawaarachchi, RA Edwards, SK Giles
Frontiers in Microbiology 14, 963173, 2023
112023
Ten simple rules and a template for creating workflows-as-applications
MJ Roach, NT Pierce-Ward, R Suchecki, V Mallawaarachchi, ...
PLoS computational biology 18 (12), e1010705, 2022
112022
Experiential learning in bioinformatics–learner support for complex workflow modelling and analysis
V Mallawaarachchi, A Wickaramarachchi, A Weliwita, I Perera, ...
International Journal of Emerging Technologies in Learning 13 (12), 19-34, 2018
112018
RepBin: Constraint-based graph representation learning for metagenomic binning
H Xue, V Mallawaarachchi, Y Zhang, V Rajan, Y Lin
Proceedings of the AAAI Conference on Artificial Intelligence 36 (4), 4637-4645, 2022
102022
Phables: from fragmented assemblies to high-quality bacteriophage genomes
V Mallawaarachchi, MJ Roach, P Decewicz, B Papudeshi, SK Giles, ...
Bioinformatics 39 (10), btad586, 2023
82023
Efficient bioinformatics computations through gpu accelerated web services
V Mallawaarachchi, A Wickramarachchi, A Welivita, I Perera, ...
Proceedings of the 2nd International Conference on Algorithms, Computing and …, 2018
72018
Accurate binning of metagenomic contigs using composition, coverage, and assembly graphs
V Mallawaarachchi, Y Lin
Journal of Computational Biology 29 (12), 1357-1376, 2022
62022
Quantitative metaproteomics reveals composition and metabolism characteristics of microbial communities in Chinese liquor fermentation starters
J Zhao, Y Yang, L Chen, J Zheng, X Lv, D Li, Z Fang, C Shen, ...
Frontiers in Microbiology 13, 5215, 2023
52023
Random Forest Classifier based Scheduler Optimization for Search Engine Web Crawlers
L Meegahapola, V Mallawaarachchi, R Alwis, E Nimalarathna, ...
7th ACM International Conference on Software and Computer Applications …, 2018
52018
Adaptive technique for web page change detection using multi-threaded crawlers
L Meegahapola, R Alwis, E Heshan, V Mallawaarachchi, D Meedeniya, ...
2017 Seventh International Conference on Innovative Computing Technology …, 2017
52017
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2
B Papudeshi, AA Vega, C Souza, SK Giles, V Mallawaarachchi, ...
Microbial Genomics 9 (9), 2023
4*2023
Plassembler: an automated bacterial plasmid assembly tool
G Bouras, AE Sheppard, V Mallawaarachchi, S Vreugde
Bioinformatics 39 (7), btad409, 2023
42023
Alignment-free Whole Genome Comparison Using k-mer Forests
G Gamage, N Gimhana, A Wickramarachchi, V Mallawaarachchi, I Perera
19th International Conference on Advances in ICT for Emerging Regions (ICTer), 2019
42019
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