Machine learning approaches and databases for prediction of drug–target interaction: a survey paper M Bagherian, E Sabeti, K Wang, MA Sartor, Z Nikolovska-Coleska, ... Briefings in bioinformatics 22 (1), 247-269, 2021 | 280 | 2021 |
Prediction of piRNAs using transposon interaction and a support vector machine K Wang, C Liang, J Liu, H Xiao, S Huang, J Xu, F Li BMC bioinformatics 15, 1-8, 2014 | 96 | 2014 |
Somatic expression of piRNA and associated machinery in the mouse identifies short, tissue-specific piRNA BPU Perera, ZTY Tsai, ML Colwell, TR Jones, JM Goodrich, K Wang, ... Epigenetics 14 (5), 504-521, 2019 | 71 | 2019 |
piRNN: deep learning algorithm for piRNA prediction K Wang, J Hoeksema, C Liang PeerJ 6, e5429, 2018 | 30 | 2018 |
Tissue and sex-specific programming of DNA methylation by perinatal lead exposure: implications for environmental epigenetics studies LK Svoboda, K Neier, K Wang, RG Cavalcante, CA Rygiel, Z Tsai, ... Epigenetics 16 (10), 1102-1122, 2021 | 19 | 2021 |
Sex-specific programming of cardiac DNA methylation by developmental phthalate exposure LK Svoboda, K Wang, RG Cavalcante, K Neier, JA Colacino, MA Sartor, ... Epigenetics Insights 13, 2516865720939971, 2020 | 19 | 2020 |
DNA demethylation is a driver for chick retina regeneration A Luz-Madrigal, E Grajales-Esquivel, J Tangeman, S Kosse, L Liu, ... Epigenetics 15 (9), 998-1019, 2020 | 18 | 2020 |
CRF: detection of CRISPR arrays using random forest K Wang, C Liang PeerJ 5, e3219, 2017 | 16 | 2017 |
Tissue-and sex-specific DNA methylation changes in mice perinatally exposed to lead (Pb) K Wang, S Liu, LK Svoboda, CA Rygiel, K Neier, TR Jones, JA Colacino, ... Frontiers in genetics 11, 551282, 2020 | 15 | 2020 |
Sex-specific alterations in cardiac DNA methylation in adult mice by perinatal lead exposure LK Svoboda, K Wang, TR Jones, JA Colacino, MA Sartor, DC Dolinoy International Journal of Environmental Research and Public Health 18 (2), 577, 2021 | 14 | 2021 |
Perinatal DEHP exposure induces sex-and tissue-specific DNA methylation changes in both juvenile and adult mice S Liu, K Wang, LK Svoboda, CA Rygiel, K Neier, TR Jones, ... Environmental Epigenetics 7 (1), dvab004, 2021 | 13 | 2021 |
Oral microbiome community composition in head and neck squamous cell carcinoma WJ Benjamin, K Wang, K Zarins, E Bellile, F Blostein, I Argirion, ... Cancers 15 (9), 2549, 2023 | 8 | 2023 |
Testing proximity of genomic regions to transcription start sites and enhancers complements gene set enrichment testing C Lee, K Wang, T Qin, MA Sartor Frontiers in genetics 11, 503551, 2020 | 7 | 2020 |
Perinatal lead exposure promotes sex-specific epigenetic programming of disease-relevant pathways in mouse heart LK Svoboda, K Wang, JM Goodrich, TR Jones, JA Colacino, KE Peterson, ... Toxics 11 (1), 85, 2023 | 5 | 2023 |
Developmental exposures to common environmental contaminants, DEHP and lead, alter adult brain and blood hydroxymethylation in mice RL Petroff, RG Cavalcante, JA Colacino, JM Goodrich, TR Jones, ... Frontiers in Cell and Developmental Biology 11, 1198148, 2023 | 2 | 2023 |
Translational toxicoepigenetic Meta-Analyses identify homologous gene DNA methylation reprogramming following developmental phthalate and lead exposure in mouse and human offspring RL Petroff, DC Dolinoy, K Wang, L Montrose, V Padmanabhan, ... Environment International 186, 108575, 2024 | 1 | 2024 |
IndepthPathway: an integrated tool for in-depth pathway enrichment analysis based on single-cell sequencing data S Lee, L Deng, Y Wang, K Wang, MA Sartor, XS Wang Bioinformatics 39 (6), btad325, 2023 | 1 | 2023 |
Gene Target Prediction of Environmental Chemicals Using Coupled Matrix–Matrix Completion K Wang, N Kim, M Bagherian, K Li, E Chou, JA Colacino, DC Dolinoy, ... Environmental Science & Technology 58 (13), 5889-5898, 2024 | | 2024 |
Sex-Specific Deflection of Age-Related DNA Methylation and Gene Expression in Mouse Heart by Perinatal Toxicant Exposures K Wang, MA Sartor, JA Colacino, DC Dolinoy, LK Svoboda bioRxiv, 2024.04. 25.591125, 2024 | | 2024 |
piOxi database: a web resource of germline and somatic tissue piRNAs identified by chemical oxidation K Wang, BPU Perera, RK Morgan, K Sala-Hamrick, V Geron, LK Svoboda, ... Database 2024, baad096, 2024 | | 2024 |