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Katharina Baum
Katharina Baum
Verified email at fu-berlin.de
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Cited by
Year
Oscillations of Delta-like1 regulate the balance between differentiation and maintenance of muscle stem cells
Y Zhang, I Lahmann, K Baum, H Shimojo, P Mourikis, J Wolf, ...
Nature Communications 12 (1), 1-16, 2021
224*2021
Quantitative modelling of amyloidogenic processing and its influence by SORLA in Alzheimer's disease
V Schmidt, K Baum, A Lao, K Rateitschak, Y Schmitz, A Teichmann, ...
The EMBO journal 31 (1), 187-200, 2012
902012
Quantitative dissection and modeling of the NF-κB p100-p105 module reveals interdependent precursor proteolysis
ZB Yılmaz, B Kofahl, P Beaudette, K Baum, I Ipenberg, F Weih, J Wolf, ...
Cell reports 9 (5), 1756-1769, 2014
612014
Self-assembly of mutant huntingtin exon-1 fragments into large complex fibrillar structures involves nucleated branching
AS Wagner, AZ Politi, A Ast, K Bravo-Rodriguez, K Baum, A Buntru, ...
Journal of molecular biology 430 (12), 1725-1744, 2018
452018
PRISMA: Protein Interaction Screen on Peptide Matrix Reveals Interaction Footprints and Modifications-Dependent Interactome of Intrinsically Disordered C/EBPβ
G Dittmar, DP Hernandez, E Kowenz-Leutz, M Kirchner, G Kahlert, ...
iScience 13, 351-370, 2019
412019
Integrated analysis of relapsed B-cell precursor Acute Lymphoblastic Leukemia identifies subtype-specific cytokine and metabolic signatures
MP Schroeder, L Bastian, C Eckert, N Gökbuget, AR James, JO Tanchez, ...
Scientific reports 9 (1), 4188, 2019
312019
MYCN-induced metabolic rewiring creates novel therapeutic vulnerabilities in neuroblastoma
B Tjaden, K Baum, V Marquardt, M Simon, M Trajkovic-Arsic, T Kouril, ...
bioRxiv, 423756, 2018
262018
Feedback, mass conservation and reaction kinetics impact the robustness of cellular oscillations
K Baum, AZ Politi, B Kofahl, R Steuer, J Wolf
PLoS computational biology 12 (12), e1005298, 2016
192016
Inhibiting phosphoglycerate dehydrogenase counteracts chemotherapeutic efficacy against MYCN-amplified neuroblastoma
B Arlt, C Zasada, K Baum, J Wuenschel, G Mastrobuoni, M Lodrini, ...
International Journal of Cancer 148 (5), 1219-1232, 2021
152021
Of gene expression and cell division time: a mathematical framework for advanced differential gene expression and data analysis
K Baum, J Schuchhardt, J Wolf, D Busse
Cell Systems 9 (6), 569-579. e7, 2019
122019
An oscillatory network controlling self-renewal of skeletal muscle stem cells
I Lahmann, Y Zhang, K Baum, J Wolf, C Birchmeier
Experimental Cell Research 409 (2), 112933, 2021
82021
Systematic Identification of MACC1-Driven Metabolic Networks in Colorectal Cancer
J Lisec, D Kobelt, W Walther, M Mokrizkij, C Grötzinger, C Jaeger, K Baum, ...
Cancers 13 (5), 978, 2021
82021
LazyFox: fast and parallelized overlapping community detection in large graphs
T Garrels, A Khodabakhsh, BY Renard, K Baum
PeerJ Computer Science 9, e1291, 2023
42023
Analysis of correlation-based biomolecular networks from different omics data by fitting stochastic block models
K Baum, JC Rajapakse, F Azuaje
F1000Research 8, 2019
22019
Protein Interaction Screen on Peptide Matrix (PRISMA) reveals interaction footprints and the PTM-dependent interactome of intrinsically disordered C/EBPβ
G Dittmar, D Perez-Hernandez, E Kowenz-Leutz, M Kirchner, G Kahlert, ...
BioRxiv, 238709, 2017
22017
Mobility data improve forecasting of COVID-19 incidence trends using Graph Neural Networks
S Witzke, N Danz, K Baum, BY Renard
epiDAMIK 6.0: The 6th International workshop on Epidemiology meets Data …, 2023
12023
SimbaML: Connecting Mechanistic Models and Machine Learning with Augmented Data
M Kleissl, L Drews, BB Heyder, J Zabbarov, P Iversen, S Witzke, ...
arXiv preprint arXiv:2304.04000, 2023
12023
DrDimont: explainable drug response prediction from differential analysis of multi-omics networks
P Hiort, J Hugo, J Zeinert, N Müller, S Kashyap, JC Rajapakse, F Azuaje, ...
Bioinformatics 38 (Supplement_2), ii113-ii119, 2022
12022
A flexible tool to correct superimposed mass isotopologue distributions in GC-APCI-MS flux experiments
J Langenhan, C Jaeger, K Baum, M Simon, J Lisec
Metabolites 12 (5), 408, 2022
12022
Fibril branching dominates self-assembly of mutant huntingtin exon-1 aggregates in vitro
AS Wagner, AZ Politi, A Steinhof, K Bravo-Rodriguez, A Buntru, ...
bioRxiv, 2017
12017
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