| A quantitative approach for measuring the reservoir of latent HIV-1 proviruses KM Bruner, Z Wang, FR Simonetti, AM Bender, KJ Kwon, S Sengupta, ... Nature 566 (7742), 120-125, 2019 | 555 | 2019 |
| Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ... Genome biology 23 (1), 258, 2022 | 159 | 2022 |
| The landscape of persistent viral genomes in ART-treated SIV, SHIV, and HIV-2 infections AM Bender, FR Simonetti, MR Kumar, EJ Fray, KM Bruner, AE Timmons, ... Cell host & microbe 26 (1), 73-85. e4, 2019 | 82 | 2019 |
| Longitudinal study reveals HIV-1–infected CD4+ T cell dynamics during long-term antiretroviral therapy AAR Antar, KM Jenike, S Jang, DN Rigau, DB Reeves, R Hoh, MR Krone, ... The Journal of clinical investigation 130 (7), 3543-3559, 2020 | 76 | 2020 |
| Filgotinib suppresses HIV-1–driven gene transcription by inhibiting HIV-1 splicing and T cell activation YHJ Yeh, KM Jenike, RM Calvi, J Chiarella, R Hoh, SG Deeks, YC Ho The Journal of clinical investigation 130 (9), 4969-4984, 2020 | 35 | 2020 |
| Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing S Kovaka, S Ou, KM Jenike, MC Schatz Nature methods 20 (1), 12-16, 2023 | 26 | 2023 |
| TCR-mimic bispecific antibodies to target the HIV-1 reservoir S Sengupta, NL Board, F Wu, M Moskovljevic, J Douglass, J Zhang, ... Proceedings of the National Academy of Sciences 119 (15), e2123406119, 2022 | 11 | 2022 |
| The XPB subunit of the TFIIH complex plays a critical role in HIV-1 transcription, and XPB inhibition by spironolactone prevents HIV-1 reactivation from latency L Mori, K Jenike, YHJ Yeh, B Lacombe, C Li, AJ Getzler, S Mediouni, ... Journal of Virology 95 (4), 10.1128/jvi. 01247-20, 2021 | 11 | 2021 |
| Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet KM Devos, P Qi, BA Bahri, DM Gimode, K Jenike, SJ Manthi, D Lule, ... Nature communications 14 (1), 3694, 2023 | 9 | 2023 |
| Gapless assembly of complete human and plant chromosomes using only nanopore sequencing S Koren, Z Bao, A Guarracino, S Ou, S Goodwin, KM Jenike, J Lucas, ... bioRxiv, 2024.03. 15.585294, 2024 | 2 | 2024 |
| Direct observation of the evolution of cell‐type‐specific microRNA expression signatures supports the hematopoietic origin model of endothelial cells AE Jenike, KM Jenike, KJ Peterson, B Fromm, MK Halushka Evolution & Development 25 (3), 226-239, 2023 | 2 | 2023 |
| Uncalled4 improves nanopore DNA and RNA modification detection via fast and accurate signal alignment S Kovaka, PW Hook, KM Jenike, V Shivakumar, LB Morina, R Razaghi, ... bioRxiv, 2024.03. 05.583511, 2024 | 1 | 2024 |
| Expression Microdissection for the Analysis of miRNA in a Single-Cell Type AE Jenike, B Bunkelman, KAP Mandell, CI Oduor, D Chin, D Mair, ... Laboratory Investigation 103 (7), 100133, 2023 | 1 | 2023 |
| Beyond the Human Genome Project: The Age of Complete Human Genome Sequences and Pangenome References DJ Taylor, JM Eizenga, Q Li, A Das, KM Jenike, EE Kenny, KH Miga, ... Annual Review of Genomics and Human Genetics 25, 2024 | | 2024 |
| Guide to k-mer approaches for genomics across the tree of life KM Jenike, L Campos-Domínguez, M Boddé, J Cerca, CN Hodson, ... arXiv preprint arXiv:2404.01519, 2024 | | 2024 |
| Convergent evolution of plant prickles is driven by repeated gene co-option over deep time JW Satterlee, D Alonso, P Gramazio, KM Jenike, J He, A Arrones, ... bioRxiv, 2024.02. 21.581474, 2024 | | 2024 |
| The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity DW Stevenson, S Ramakrishnan, C de Santis Alves, LA Coelho, ... bioRxiv, 2023 | | 2023 |
| Expression Microdissection for use in qPCR based analysis of miRNA in a single cell type AE Jenike, B Bunkelman, KA Perzel Mandell, C Oduor, D Chin, D Mair, ... bioRxiv, 2022.06. 24.497524, 2022 | | 2022 |
| of latent HIV-1 proviruses KM Bruner, Z Wang, FR Simonetti, AM Bender, KJ Kwon, S Sengupta, ... Springer US, 2019 | | 2019 |
| Targeting HIV-1-driven aberrant transcription and proliferation YC Ho, YH Yeh, K Jenike | | 2019 |
