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Adam Hockenberry
Adam Hockenberry
Associate Director of Scientific Communications, Tempus Labs Inc.
Verified email at tempus.com - Homepage
Title
Cited by
Cited by
Year
BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains
AJ Hockenberry, CO Wilke
PeerJ 9, e11396, 2021
124*2021
N-methyl-D-aspartate receptor mechanosensitivity is governed by C terminus of NR2B subunit
P Singh, S Doshi, JM Spaethling, AJ Hockenberry, TP Patel, ...
Journal of Biological Chemistry 287 (6), 4348-4359, 2012
752012
Synthetic in vitro circuits
AJ Hockenberry, MC Jewett
Current opinion in chemical biology 16 (3-4), 253-259, 2012
632012
NR2A and NR2B subunits differentially mediate MAP kinase signaling and mitochondrial morphology following excitotoxic insult
AM Choo, DM Geddes-Klein, A Hockenberry, D Scarsella, MN Mesfin, ...
Neurochemistry international 60 (5), 506-516, 2012
632012
Economic insecurity and the rise in gun violence at US schools
AR Pah, J Hagan, AL Jennings, A Jain, K Albrecht, AJ Hockenberry, ...
Nature Human Behaviour 1 (2), 1-6, 2017
502017
Quantifying position-dependent codon usage bias
AJ Hockenberry, MI Sirer, LAN Amaral, MC Jewett
Molecular biology and evolution 31 (7), 1880-1893, 2014
472014
Assembly and functionality of the ribosome with tethered subunits
NA Aleksashin, M Leppik, AJ Hockenberry, D Klepacki, ...
Nature communications 10 (1), 930, 2019
452019
Sequential Glycosylation of Proteins with Substrate-Specific N-Glycosyltransferases
L Lin, W Kightlinger, SK Prabhu, AJ Hockenberry, C Li, LX Wang, ...
ACS Central Science 6 (2), 144-154, 2020
382020
Computational investigation of the changing patterns of subtype specific NMDA receptor activation during physiological glutamatergic neurotransmission
P Singh, AJ Hockenberry, VR Tiruvadi, DF Meaney
PLoS Computational Biology 7 (6), e1002106, 2011
322011
Leveraging genome-wide datasets to quantify the functional role of the anti-Shine–Dalgarno sequence in regulating translation efficiency
AJ Hockenberry, AR Pah, MC Jewett, LAN Amaral
Open biology 7 (1), 160239, 2017
302017
Clinical, genomic, and transcriptomic data profiling of biliary tract cancer reveals subtype-specific immune signatures
K Mody, P Jain, SM El-Refai, NS Azad, DJ Zabransky, M Baretti, RT Shroff, ...
JCO precision oncology 6, e2100510, 2022
292022
Diversity of translation initiation mechanisms across bacterial species is driven by environmental conditions and growth demands
AJ Hockenberry, AJ Stern, LAN Amaral, MC Jewett
Molecular biology and evolution 35 (3), 582-592, 2018
282018
Mutational characterization and mapping of the 70S ribosome active site
AE d’Aquino, T Azim, NA Aleksashin, AJ Hockenberry, A Krüger, ...
Nucleic acids research 48 (5), 2777-2789, 2020
272020
Depletion of Shine-Dalgarno sequences within bacterial coding regions is expression dependent
C Yang, AJ Hockenberry, MC Jewett, LAN Amaral
G3: Genes, Genomes, Genetics 6 (11), 3467-3474, 2016
222016
Neisseria gonorrhoeae Exposed to Sublethal Levels of Hydrogen Peroxide Mounts a Complex Transcriptional Response
SJ Quillin, AJ Hockenberry, MC Jewett, HS Seifert
Msystems 3 (5), 10.1128/msystems. 00156-18, 2018
172018
Within-gene Shine–Dalgarno sequences are not selected for function
AJ Hockenberry, MC Jewett, LAN Amaral, CO Wilke
Molecular biology and evolution 35 (10), 2487-2498, 2018
152018
Evolutionary couplings detect side-chain interactions
AJ Hockenberry, CO Wilke
PeerJ 7, e7280, 2019
142019
NullSeq: a tool for generating random coding sequences with desired amino acid and GC contents
SS Liu, AJ Hockenberry, A Lancichinetti, MC Jewett, LAN Amaral
PLoS computational biology 12 (11), e1005184, 2016
142016
Phylogenetic weighting does little to improve the accuracy of evolutionary coupling analyses
AJ Hockenberry, CO Wilke
Entropy 21 (10), 1000, 2019
132019
A novel framework for evaluating the performance of codon usage bias metrics
SS Liu, AJ Hockenberry, MC Jewett, LAN Amaral
Journal of The Royal Society Interface 15 (138), 20170667, 2018
92018
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Articles 1–20