Challenges imposed by minor reference alleles on the identification and reporting of clinical variants from exome data M Koko, MOE Abdallah, M Amin, M Ibrahim BMC genomics 19, 1-8, 2018 | 18 | 2018 |
Age, absolute CD4 count, and CD4 percentage in relation to HPV infection and the stage of cervical disease in HIV-1-positive women R Chambuso, R Ramesar, E Kaambo, AT Murahwa, MOE Abdallah, ... Medicine 99 (9), e19273, 2020 | 14 | 2020 |
EBV associated breast cancer whole methylome analysis reveals viral and developmental enriched pathways MOE Abdallah, UK Algizouli, MA Suliman, RA Abdulrahman, M Koko, ... Frontiers in oncology 8, 316, 2018 | 14 | 2018 |
Exome sequencing of a colorectal cancer family reveals shared mutation pattern and predisposition circuitry along tumor pathways SH Suleiman, ME Koko, WH Nasir, O Elfateh, UK Elgizouli, MO Abdallah, ... Frontiers in genetics 6, 153776, 2015 | 14 | 2015 |
Downregulation of MGMT expression by targeted editing of DNA methylation enhances temozolomide sensitivity in glioblastoma BOE Xinyu Han a, Mohammed O.E. Abdallah b, Peter Breuer a, Fabian Stahl a,c ... Neoplasia 44 (100929), 2023 | 5 | 2023 |
Lost in translation: the pitfalls of Ensembl gene annotations between human genome assemblies and their impact on diagnostics RR Mohammed O.E. Abdallah, Mahmoud Koko Expert Review of Molecular Diagnostics 23 (8), 723-727, 2023 | | 2023 |
The variant catalogue pipeline: A workflow to generate a background variant library from Whole Genome Sequences S Correard, MOE Abdallah, B Hewitson, WW Wasserman bioRxiv, 2022.10. 03.508010, 2022 | | 2022 |
Recurrent AIPL1 c.487C>T truncating variant in Leber Congenital Amaurosis: Support of pathogenicity and regional implications MOE Abdallah, ME Koko, S Faisal, MJ Newport, ME Ibrahim bioRxiv, 290650, 2018 | | 2018 |
Querying annotation data from the high performance Cellbase web MOE Abdallah Bioconductor, 2017 | | 2017 |
Five decades lead in biomedical research: University of Khartoum tops Sudanese universities in PubMed articles MOE Abdallah, M Koko, M Amin, Y Bakhit Khartoum Medical Journal 10 (3), 2017 | | 2017 |
A bioinformatic panel to interrogate thousands of ExAC variants with minor reference allele that are missed by conventional variant calling M Koko, MOE Abdallah, M Amin, M Ibrahim bioRxiv, 093450, 2016 | | 2016 |
In-silico analysis of MHC genes in hereditary colorectal cancer shows identical by state SNP sharing affecting HLA-DQB1 binding groove ME Koko, SH Suleiman, MOE Abdallah, M Saad, ME Ibrahim bioRxiv, 040436, 2016 | | 2016 |
Methylome analysis reveals dysregulated developmental and viral pathways in breast cancer MOE Abdallah, UK Algizouli, MA Suliman, RA Abdulrahman, M Koko, ... bioRxiv, 034322, 2015 | | 2015 |
Exome sequencing of a colorectal cancer family reveals shared mutation pattern and predisposition circuitry along tumor pathways HS Mohamed, ME Ibrahim, SH Suleiman, ME Koko, WH Nasir, O Elfateh, ... University of Khartoum, 0 | | |
In-silico analysis of MHC genes in hereditary colorectal cancer shows identical by state SNP sharing affecting HLA-DQB1 binding groove M Abdallah, M Ibrahim University of Khartoum, 0 | | |