| MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ... Nucleic acids research 48 (D1), D561-D569, 2020 | 312 | 2020 |
| Complexities in understanding antimicrobial resistance across domesticated animal, human, and environmental systems DW Graham, G Bergeron, MW Bourassa, J Dickson, F Gomes, A Howe, ... Annals of the New York Academy of Sciences 1441 (1), 17-30, 2019 | 180 | 2019 |
| Critically important antibiotics: criteria and approaches for measuring and reducing their use in food animal agriculture HM Scott, G Acuff, G Bergeron, MW Bourassa, J Gill, DW Graham, ... Annals of the New York Academy of Sciences 1441 (1), 8-16, 2019 | 118 | 2019 |
| Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ... Frontiers in microbiology 10, 1980, 2019 | 72 | 2019 |
| Antimicrobial use on 36 beef feedlots in Western Canada: 2008–2012 SA Brault, SJ Hannon, SP Gow, BN Warr, J Withell, J Song, CM Williams, ... Frontiers in veterinary science 6, 329, 2019 | 56 | 2019 |
| Bovine respiratory microbiota of feedlot cattle and its association with disease J Chai, SF Capik, B Kegley, JT Richeson, JG Powell, J Zhao Veterinary Research 53 (1), 4, 2022 | 53 | 2022 |
| Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics KL Huebner, JN Martin, CJ Weissend, KL Holzer, JK Parker, SM Lakin, ... Scientific reports 9 (1), 2559, 2019 | 50 | 2019 |
| MEGARes and AMR++, v3. 0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput … N Bonin, E Doster, H Worley, LJ Pinnell, JE Bravo, P Ferm, S Marini, ... Nucleic acids research 51 (D1), D744-D752, 2023 | 47 | 2023 |
| Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine … MA Scott, AR Woolums, CE Swiderski, AD Perkins, B Nanduri, DR Smith, ... PLoS One 15 (1), e0227507, 2020 | 43 | 2020 |
| Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent R Zaheer, SM Lakin, RO Polo, SR Cook, FJ Larney, PS Morley, ... BMC microbiology 19, 1-17, 2019 | 42 | 2019 |
| Investigation of tylosin in feed of feedlot cattle and effects on liver abscess prevalence, and fecal and soil microbiomes and resistomes MD Weinroth, JN Martin, E Doster, I Geornaras, JK Parker, CR Carlson, ... Journal of animal science 97 (11), 4567-4578, 2019 | 37 | 2019 |
| Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ... Communications biology 2 (1), 294, 2019 | 32 | 2019 |
| Calculation of antimicrobial use indicators in beef feedlots—effects of choice of metric and standardized values SA Brault, SJ Hannon, SP Gow, SJG Otto, CW Booker, PS Morley Frontiers in veterinary science 6, 330, 2019 | 31 | 2019 |
| Bioplastic accumulates antibiotic and metal resistance genes in coastal marine sediments A Di Cesare, LJ Pinnell, D Brambilla, G Elli, R Sabatino, MB Sathicq, ... Environmental Pollution 291, 118161, 2021 | 30 | 2021 |
| Bacteroidetes and firmicutes drive differing microbial diversity and community composition among micro-environments in the bovine rumen LJ Pinnell, AA Reyes, CA Wolfe, MD Weinroth, JL Metcalf, RJ Delmore, ... Frontiers in Veterinary Science 9, 897996, 2022 | 24 | 2022 |
| Environmental persistence of equid herpesvirus type‐1 NT Saklou, BA Burgess, LV Ashton, PS Morley, LS Goehring Equine veterinary journal 53 (2), 349-355, 2021 | 22 | 2021 |
| Metagenomic characterization of the microbiome and resistome of retail ground beef products E Doster, KM Thomas, MD Weinroth, JK Parker, KK Crone, TM Arthur, ... Frontiers in Microbiology 11, 541972, 2020 | 22 | 2020 |
| Injury-induced pulmonary tuft cells are heterogenous, arise independent of key Type 2 cytokines, and are dispensable for dysplastic repair J Barr, ME Gentile, S Lee, ME Kotas, MF de Mello Costa, NP Holcomb, ... Elife 11, e78074, 2022 | 21 | 2022 |
| Genomic diversity of class I integrons from antimicrobial resistant strains of Salmonella Typhimurium isolated from livestock, poultry and humans S Rao, L Linke, E Doster, D Hyatt, BA Burgess, R Magnuson, ... Plos one 15 (12), e0243477, 2020 | 20 | 2020 |
| Not all liver abscesses are created equal: the impact of tylosin and antibiotic alternatives on bovine liver abscess microbial communities and a first look at bacteroidetes … LJ Pinnell, CW Whitlow, KL Huebner, TC Bryant, J Martin, KE Belk, ... Frontiers in Microbiology 13, 882419, 2022 | 19 | 2022 |
