| Exploring tissue architecture using spatial transcriptomics A Rao, D Barkley, GS França, I Yanai Nature 596 (7871), 211-220, 2021 | 665 | 2021 |
| Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas R Moncada, D Barkley, F Wagner, M Chiodin, JC Devlin, M Baron, ... Nature biotechnology 38 (3), 333-342, 2020 | 605 | 2020 |
| Widespread transcriptional scanning in the testis modulates gene evolution rates B Xia, Y Yan, M Baron, F Wagner, D Barkley, M Chiodin, SY Kim, ... Cell 180 (2), 248-262. e21, 2020 | 144 | 2020 |
| Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment D Barkley, R Moncada, M Pour, DA Liberman, I Dryg, G Werba, W Wang, ... Nature genetics 54 (8), 1192-1201, 2022 | 140 | 2022 |
| Accurate denoising of single-cell RNA-Seq data using unbiased principal component analysis F Wagner, D Barkley, I Yanai BioRxiv, 655365, 2019 | 35 | 2019 |
| Cancer cell states and emergent properties of the dynamic tumor system D Barkley, A Rao, M Pour, GS França, I Yanai Genome research 31 (10), 1719-1727, 2021 | 15 | 2021 |
| Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas R Moncada, D Barkley, F Wagner, M Chiodin, JC Devlin, M Baron, ... Nature Biotechnology 38 (12), 1476-1476, 2020 | 13 | 2020 |
| Plasticity and clonality of cancer cell states D Barkley, I Yanai Trends in cancer 5 (11), 655-656, 2019 | 13 | 2019 |
| Drug-induced adaptation along a resistance continuum in cancer cells GS França, M Baron, M Pour, BR King, A Rao, S Misirlioglu, D Barkley, ... Biorxiv, 2022.06. 21.496830, 2022 | 12 | 2022 |
| Recurrence of cancer cell states across diverse tumors and their interactions with the microenvironment D Barkley, R Moncada, M Pour, DA Liberman, I Dryg, G Werba, W Wang, ... BioRxiv, 2021.12. 20.473565, 2021 | 5 | 2021 |
| Desmosome mutations impact the tumor microenvironment to promote melanoma proliferation M Baron, M Tagore, P Wall, F Zheng, D Barkley, I Yanai, J Yang, M Kiuru, ... bioRxiv, 2023 | | 2023 |
| Dose-dependent effects of interferon-gamma treatment on pancreatic ductal adenocarcinoma cell states DA Liberman, D Barkley, I Yanai Cancer Research 82 (12_Supplement), 1600-1600, 2022 | | 2022 |
| Recurrence of Cancer Cell States across Diverse Cancer Types and Their Interactions with the Tumor Microenvironment D Barkley New York University, 2022 | | 2022 |
