| Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis RA Bull, TN Adikari, JM Ferguson, JM Hammond, I Stevanovski, ... Nature communications 11 (1), 6272, 2020 | 253 | 2020 |
| Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing I Stevanovski, SR Chintalaphani, H Gamaarachchi, JM Ferguson, ... Science advances 8 (9), eabm5386, 2022 | 106 | 2022 |
| GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ... BMC bioinformatics 21, 1-13, 2020 | 83 | 2020 |
| Fast nanopore sequencing data analysis with SLOW5 H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ... Nature biotechnology 40 (7), 1026-1029, 2022 | 69 | 2022 |
| Autonomic trust management in cloud-based and highly dynamic IoT applications S Namal, H Gamaarachchi, G MyoungLee, TW Um 2015 ITU Kaleidoscope: Trust in the Information Society (K-2015), 1-8, 2015 | 68 | 2015 |
| Seed-and-vote based in-memory accelerator for dna read mapping AF Laguna, H Gamaarachchi, X Yin, M Niemier, S Parameswaran, XS Hu Proceedings of the 39th International Conference on Computer-Aided Design, 1-9, 2020 | 37 | 2020 |
| Power analysis based side channel attack H Gamaarachchi, H Ganegoda arXiv preprint arXiv:1801.00932, 2018 | 27 | 2018 |
| Efficient real-time selective genome sequencing on resource-constrained devices PJ Shih, H Saadat, S Parameswaran, H Gamaarachchi GigaScience 12, giad046, 2023 | 25 | 2023 |
| Genopo: a nanopore sequencing analysis toolkit for portable Android devices H Samarakoon, S Punchihewa, A Senanayake, JM Hammond, ... Communications biology 3 (1), 538, 2020 | 25* | 2020 |
| Featherweight long read alignment using partitioned reference indexes H Gamaarachchi, S Parameswaran, MA Smith Scientific reports 9 (1), 4318, 2019 | 24 | 2019 |
| DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing A Senanayake, H Gamaarachchi, D Herath, R Ragel BMC bioinformatics 24 (1), 31, 2023 | 22 | 2023 |
| Flexible and efficient handling of nanopore sequencing signal data with slow5tools H Samarakoon, JM Ferguson, SP Jenner, TG Amos, S Parameswaran, ... Genome Biology 24 (1), 69, 2023 | 18 | 2023 |
| Accelerated nanopore basecalling with SLOW5 data format H Samarakoon, JM Ferguson, H Gamaarachchi, IW Deveson Bioinformatics 39 (6), btad352, 2023 | 17 | 2023 |
| InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses JM Ferguson, H Gamaarachchi, T Nguyen, A Gollon, S Tong, ... Bioinformatics 38 (5), 1443-1446, 2022 | 14 | 2022 |
| Accelerating correlation power analysis using graphics processing units (gpus) H Gamaarachchi, R Ragel, D Jayasinghe 7th International Conference on Information and Automation for …, 2014 | 12 | 2014 |
| The landscape of genomic structural variation in Indigenous Australians ALM Reis, M Rapadas, JM Hammond, H Gamaarachchi, I Stevanovski, ... Nature 624 (7992), 602-610, 2023 | 11 | 2023 |
| Simulation of nanopore sequencing signal data with tunable parameters H Gamaarachchi, JM Ferguson, H Samarakoon, K Liyanage, IW Deveson Genome Research 34 (5), 778-783, 2024 | 10* | 2024 |
| ApproxTrain: Fast simulation of approximate multipliers for DNN training and inference J Gong, H Saadat, H Gamaarachchi, H Javaid, XS Hu, S Parameswaran IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2023 | 9 | 2023 |
| Accelerating text-based plagiarism detection using gpus MAC Jiffriya, MACA Jahan, H Gamaarachchi, RG Ragel 2015 IEEE 10th International Conference on Industrial and Information …, 2015 | 9 | 2015 |
| A CCG expansion in ABCD3 causes oculopharyngodistal myopathy in individuals of European ancestry A Cortese, SJ Beecroft, S Facchini, R Curro, M Cabrera-Serrano, ... MedRxiv, 2023.10. 09.23296582, 2023 | 8 | 2023 |
Ira DevesonGarvan Institute of Medical ResearchVerified email at garvan.org.au
