| IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 49 (D1), D764-D775, 2021 | 261 | 2021 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 204 | 2021 |
| The metagenomics and metadesign of the subways and urban biomes (MetaSUB) international consortium inaugural meeting report Microbiome 4 (1), 24, 2016 | 122 | 2016 |
| IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata AP Camargo, S Nayfach, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 51 (D1), D733-D743, 2023 | 102 | 2023 |
| On the intrinsic sterility of 3D printing RY Neches, KJ Flynn, L Zaman, E Tung, N Pudlo PeerJ 4, e2661, 2016 | 79 | 2016 |
| A microbial survey of the International Space Station (ISS) JM Lang, DA Coil, RY Neches, WE Brown, D Cavalier, M Severance, ... PeerJ 5, e4029, 2017 | 71 | 2017 |
| A pharyngeal jaw evolutionary innovation facilitated extinction in Lake Victoria cichlids MD McGee, SR Borstein, RY Neches, HH Buescher, O Seehausen, ... Science 350 (6264), 1077-1079, 2015 | 67 | 2015 |
| Growth of 48 built environment bacterial isolates on board the International Space Station (ISS) DA Coil, RY Neches, JM Lang, WE Brown, M Severance, D Cavalier, ... PeerJ 4, e1842, 2016 | 63 | 2016 |
| A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq EG Wilbanks, DJ Larsen, RY Neches, AI Yao, CY Wu, RAS Kjolby, ... Nucleic acids research 40 (10), e74-e74, 2012 | 60 | 2012 |
| Evaluating genomic divergence and parallelism in replicate ecomorphs from young and old cichlid adaptive radiations MD McGee, RY Neches, O Seehausen Molecular ecology 25 (1), 260-268, 2016 | 56 | 2016 |
| The common oceanographer: crowdsourcing the collection of oceanographic data FM Lauro, SJ Senstius, J Cullen, R Neches, RM Jensen, MV Brown, ... PLoS biology 12 (9), e1001947, 2014 | 56 | 2014 |
| Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization X Jiang, MGI Langille, RY Neches, M Elliot, SA Levin, JA Eisen, JS Weitz, ... PLOS ONE 7 (9), e43866, 2012 | 53 | 2012 |
| Global genetic cartography of urban metagenomes and anti-microbial resistance D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin, C Bhattacharya, ... BioRxiv, 724526, 2019 | 33 | 2019 |
| Atypical divergence of SARS-CoV-2 Orf8 from Orf7a within the coronavirus lineage suggests potential stealthy viral strategies in immune evasion RY Neches, NC Kyrpides, CA Ouzounis MBio 12 (1), 10.1128/mbio. 03014-20, 2021 | 29 | 2021 |
| Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll TC Jeffries, M Ostrowski, RB Williams, C Xie, RM Jensen, JJ Grzymski, ... Scientific Reports 5 (1), 15383, 2015 | 29 | 2015 |
| Untapped viral diversity in global soil metagenomes EB Graham, D Paez-Espino, C Brislawn, RY Neches, KS Hofmockel, ... BioRxiv, 583997, 2019 | 22 | 2019 |
| Recombination should not be an afterthought RY Neches, MD McGee, NC Kyrpides Nature Reviews Microbiology 18 (11), 606-606, 2020 | 16 | 2020 |
| High-resolution magnetohydrodynamic equilibrium code for unity beta plasmas PA Gourdain, JN Leboeuf, RY Neches Journal of Computational Physics 216 (1), 275-299, 2006 | 16 | 2006 |
| Bacterial communities associated with cell phones and shoes DA Coil, RY Neches, JM Lang, G Jospin, WE Brown, D Cavalier, ... PeerJ 8, e9235, 2020 | 9 | 2020 |
| Stability of highly shifted equilibria in a large aspect ratio low-field tokamak PA Gourdain, JN Leboeuf, RY Neches Physics of Plasmas 14 (11), 2007 | 8 | 2007 |
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
