| RERconverge: an R package for associating evolutionary rates with convergent traits A Kowalczyk, WK Meyer, R Partha, W Mao, NL Clark, M Chikina Bioinformatics 35 (22), 4815-4817, 2019 | 80 | 2019 |
| Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals WK Meyer, J Jamison, R Richter, SE Woods, R Partha, A Kowalczyk, ... Science 361 (6402), 591-594, 2018 | 75 | 2018 |
| Evolutionary constraint and innovation across hundreds of placental mammals MJ Christmas, IM Kaplow, DP Genereux, MX Dong, GM Hughes, X Li, ... Science 380 (6643), eabn3943, 2023 | 73 | 2023 |
| Pan-mammalian analysis of molecular constraints underlying extended lifespan A Kowalczyk, R Partha, NL Clark, M Chikina Elife 9, e51089, 2020 | 57 | 2020 |
| A genomic timescale for placental mammal evolution NM Foley, VC Mason, AJ Harris, KR Bredemeyer, J Damas, HA Lewin, ... Science 380 (6643), eabl8189, 2023 | 46 | 2023 |
| Integrating gene annotation with orthology inference at scale BM Kirilenko, C Munegowda, E Osipova, D Jebb, V Sharma, M Blumer, ... Science 380 (6643), eabn3107, 2023 | 38 | 2023 |
| Leveraging base-pair mammalian constraint to understand genetic variation and human disease PF Sullivan, JRS Meadows, S Gazal, BDN Phan, X Li, DP Genereux, ... Science 380 (6643), eabn2937, 2023 | 37 | 2023 |
| Robust method for detecting convergent shifts in evolutionary rates R Partha, A Kowalczyk, NL Clark, M Chikina Molecular biology and evolution 36 (8), 1817-1830, 2019 | 37 | 2019 |
| Three-dimensional genome rewiring in loci with human accelerated regions KC Keough, S Whalen, F Inoue, PF Przytycki, T Fair, C Deng, M Steyert, ... Science 380 (6643), eabm1696, 2023 | 28 | 2023 |
| Insights into mammalian TE diversity through the curation of 248 genome assemblies AB Osmanski, NS Paulat, J Korstian, JR Grimshaw, M Halsey, ... Science 380 (6643), eabn1430, 2023 | 26 | 2023 |
| Mammalian evolution of human cis-regulatory elements and transcription factor binding sites G Andrews, K Fan, HE Pratt, N Phalke, Zoonomia Consortium §, ... Science 380 (6643), eabn7930, 2023 | 26 | 2023 |
| Relating enhancer genetic variation across mammals to complex phenotypes using machine learning IM Kaplow, AJ Lawler, DE Schäffer, C Srinivasan, HH Sestili, ME Wirthlin, ... Science 380 (6643), eabm7993, 2023 | 26 | 2023 |
| The contribution of historical processes to contemporary extinction risk in placental mammals AP Wilder, MA Supple, A Subramanian, A Mudide, R Swofford, ... Science 380 (6643), eabn5856, 2023 | 24 | 2023 |
| Random forest model identifies serve strength as a key predictor of tennis match outcome Z Gao, A Kowalczyk Journal of Sports Analytics 7 (4), 255-262, 2021 | 22 | 2021 |
| Evolutionary rate covariation identifies SLC30A9 (ZnT9) as a mitochondrial zinc transporter A Kowalczyk, O Gbadamosi, K Kolor, J Sosa, L Andrzejczuk, G Gibson, ... Biochemical Journal 478 (17), 3205-3220, 2021 | 19 | 2021 |
| The functional and evolutionary impacts of human-specific deletions in conserved elements JR Xue, A Mackay-Smith, K Mouri, MF Garcia, MX Dong, JF Akers, ... Science 380 (6643), eabn2253, 2023 | 17 | 2023 |
| Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness A Kowalczyk, M Chikina, N Clark Elife 11, e76911, 2022 | 17 | 2022 |
| Phylogenetic permulations: a statistically rigorous approach to measure confidence in associations in a phylogenetic context E Saputra, A Kowalczyk, L Cusick, N Clark, M Chikina Molecular Biology and Evolution 38 (7), 3004-3021, 2021 | 15 | 2021 |
| Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs KL Moon, HJ Huson, K Morrill, MS Wang, X Li, K Srikanth, ... Science 380 (6643), eabn5887, 2023 | 7 | 2023 |
| Vocal learning–associated convergent evolution in mammalian proteins and regulatory elements ME Wirthlin, TA Schmid, JE Elie, X Zhang, A Kowalczyk, R Redlich, ... Science 383 (6690), eabn3263, 2024 | 5 | 2024 |
