| FoldX 5.0: working with RNA, small molecules and a new graphical interface J Delgado, LG Radusky, D Cianferoni, L Serrano Bioinformatics 35 (20), 4168-4169, 2019 | 246 | 2019 |
| In silico mutagenesis of human ACE2 with S protein and translational efficiency explain SARS-CoV-2 infectivity in different species J Delgado Blanco, X Hernandez-Alias, D Cianferoni, L Serrano PLoS Computational Biology 16 (12), e1008450, 2020 | 33 | 2020 |
| Specialization of the photoreceptor transcriptome by Srrm3-dependent microexons is required for outer segment maintenance and vision L Ciampi, F Mantica, L López-Blanch, J Permanyer, C Rodriguez-Marín, ... Proceedings of the National Academy of Sciences 119 (29), e2117090119, 2022 | 14 | 2022 |
| Protein-assisted RNA fragment docking (RnaX) for modeling RNA–protein interactions using ModelX J Delgado Blanco, LG Radusky, D Cianferoni, L Serrano Proceedings of the National Academy of Sciences 116 (49), 24568-24573, 2019 | 12 | 2019 |
| Stepwise emergence of the neuronal gene expression program in early animal evolution SR Najle, X Grau-Bové, A Elek, C Navarrete, D Cianferoni, C Chiva, ... Cell 186 (21), 4676-4693. e29, 2023 | 9 | 2023 |
| ProteinFishing: a protein complex generator within the ModelX toolsuite D Cianferoni, LG Radusky, SA Head, L Serrano, J Delgado Bioinformatics 36 (14), 4208-4210, 2020 | 4 | 2020 |
| Interactions between BRD4S, LOXL2, and MED1 drive cell cycle transcription in triple‐negative breast cancer L Pascual‐Reguant, Q Serra‐Camprubí, D Datta, D Cianferoni, S Kourtis, ... EMBO Molecular Medicine 15 (12), e18459, 2023 | 1 | 2023 |
| De novo design of high-affinity single-domain antibodies R Van Der Kant, Z Zhang, I Marković, D Vizarraga, T Garcia, K Maragkou, ... bioRxiv, 2024.04. 22.589762, 2024 | | 2024 |
| Peptidoform analysis of IP-MS data allows detection of differentially present bait proteoforms S Sdelci, S Sdelci, S Kourtis, D Cianferoni, L Serrano bioRxiv, 2024.01. 23.576810, 2024 | | 2024 |
| Computational engineering of biomolecules D Cianferoni Universitat Pompeu Fabra, 2023 | | 2023 |
| Interactions between BRD4 short, LOXL2, and MED1 drive cell cycle transcription in triple-negative breast cancer LP Reguant, TV Tian, D Datta, D Cianferoni, S Kourtis, A Gañez-Zapater, ... European Journal of Cancer 174, S61-S62, 2022 | | 2022 |
| The BRD4S-LOXL2-MED1 interaction at the forefront of cell cycle transcriptional control in triple-negative breast cancer L Pascual-Reguant, TV Tian, D Datta, D Cianferoni, S Kourtis, ... bioRxiv, 2022.05. 27.493725, 2022 | | 2022 |
