| The CRAPome: a contaminant repository for affinity purification–mass spectrometry data D Mellacheruvu, Z Wright, AL Couzens, JP Lambert, NA St-Denis, T Li, ... Nature methods 10 (8), 730-736, 2013 | 1658 | 2013 |
| MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics AT Kong, FV Leprevost, DM Avtonomov, D Mellacheruvu, AI Nesvizhskii Nature methods 14 (5), 513-520, 2017 | 1193 | 2017 |
| SAINT: probabilistic scoring of affinity purification–mass spectrometry data H Choi, B Larsen, ZY Lin, A Breitkreutz, D Mellacheruvu, D Fermin, ZS Qin, ... Nature methods 8 (1), 70-73, 2011 | 801 | 2011 |
| Philosopher: a versatile toolkit for shotgun proteomics data analysis F da Veiga Leprevost, SE Haynes, DM Avtonomov, HY Chang, ... Nature methods 17 (9), 869-870, 2020 | 279 | 2020 |
| Targeting the MLL complex in castration-resistant prostate cancer R Malik, AP Khan, IA Asangani, M Cieślik, JR Prensner, X Wang, MK Iyer, ... Nature medicine 21 (4), 344-352, 2015 | 198 | 2015 |
| Analyzing protein‐protein interactions from affinity purification‐mass spectrometry data with SAINT H Choi, G Liu, D Mellacheruvu, M Tyers, AC Gingras, AI Nesvizhskii Current protocols in bioinformatics 39 (1), 8.15. 1-8.15. 23, 2012 | 160 | 2012 |
| Functions of the COPII gene paralogs SEC23A and SEC23B are interchangeable in vivo R Khoriaty, GG Hesketh, A Bernard, AC Weyand, D Mellacheruvu, G Zhu, ... Proceedings of the National Academy of Sciences 115 (33), E7748-E7757, 2018 | 66 | 2018 |
| Genetic Networks Inducing Invasive Growth in Saccharomyces cerevisiae Identified Through Systematic Genome-Wide Overexpression CA Shively, MJ Eckwahl, CJ Dobry, D Mellacheruvu, A Nesvizhskii, ... Genetics 193 (4), 1297-1310, 2013 | 58 | 2013 |
| Allele-specific RNA interference prevents neuropathy in Charcot-Marie-Tooth disease type 2D mouse models KH Morelli, LB Griffin, NK Pyne, LM Wallace, AM Fowler, SN Oprescu, ... The Journal of clinical investigation 129 (12), 5568-5583, 2019 | 53 | 2019 |
| The yeast Sks1p kinase signaling network regulates pseudohyphal growth and glucose response C Johnson, HK Kweon, D Sheidy, CA Shively, D Mellacheruvu, ... PLoS Genetics 10 (3), e1004183, 2014 | 42 | 2014 |
| HSC70 is a chaperone for wild-type and mutant cardiac myosin binding protein C AA Glazier, N Hafeez, D Mellacheruvu, V Basrur, AI Nesvizhskii, LM Lee, ... JCI insight 3 (11), 2018 | 39 | 2018 |
| Prediction of immunotherapy response in melanoma through combined modeling of neoantigen burden and immune-related resistance mechanisms CW Abbott, SM Boyle, RM Pyke, LD McDaniel, E Levy, FCP Navarro, ... Clinical Cancer Research 27 (15), 4265-4276, 2021 | 32 | 2021 |
| PAF1 complex interactions with SETDB1 mediate promoter H3K9 methylation and transcriptional repression of Hoxa9 and Meis1 in acute myeloid leukemia J Ropa, N Saha, Z Chen, J Serio, W Chen, D Mellacheruvu, L Zhao, ... Oncotarget 9 (31), 22123, 2018 | 32 | 2018 |
| Large-scale analysis of kinase signaling in yeast pseudohyphal development identifies regulation of ribonucleoprotein granules CA Shively, HK Kweon, KL Norman, D Mellacheruvu, T Xu, DT Sheidy, ... PLoS Genetics 11 (10), e1005564, 2015 | 32 | 2015 |
| Precision neoantigen discovery using large-scale immunopeptidomes and composite modeling of MHC peptide presentation RM Pyke, D Mellacheruvu, S Dea, CW Abbott, SV Zhang, NA Phillips, ... Molecular & Cellular Proteomics 20, 2021 | 31 | 2021 |
| RAD51AP1 regulates ALT-HDR through chromatin-directed homeostasis of TERRA N Kaminski, AR Wondisford, Y Kwon, ML Lynskey, R Bhargava, ... Molecular cell 82 (21), 4001-4017. e7, 2022 | 25 | 2022 |
| Kir2. 1 interactome mapping uncovers PKP4 as a modulator of the Kir2. 1-regulated inward rectifier potassium currents SS Park, D Ponce-Balbuena, R Kuick, G Guerrero-Serna, J Yoon, ... Molecular & Cellular Proteomics 19 (9), 1436-1449, 2020 | 24 | 2020 |
| Proteomic profiling of naïve multiple myeloma patient plasma cells identifies pathways associated with favourable response to bortezomib‐based treatment regimens D Dytfeld, S Rosebeck, M Kandarpa, A Mayampurath, D Mellacheruvu, ... British journal of haematology 170 (1), 66-79, 2015 | 23 | 2015 |
| A machine learning algorithm with subclonal sensitivity reveals widespread pan-cancer human leukocyte antigen loss of heterozygosity RM Pyke, D Mellacheruvu, S Dea, CW Abbott, L McDaniel, DP Bhave, ... Nature Communications 13 (1), 1925, 2022 | 8 | 2022 |
| Proteomic Profiling of Multiple Myeloma Using iTRAQ Labeling Followed by Multidimensional Liquid Chromatography and Tandem Mass Spectrometry. D Dytfeld, M Hari, J Strahler, D Mellacheruvu, S Subramani, A Nesvizhskii, ... Blood 114 (22), 4865, 2009 | 5 | 2009 |
