| RNA-Seq identifies novel myocardial gene expression signatures of heart failure Y Liu, M Morley, J Brandimarto, S Hannenhalli, Y Hu, EA Ashley, ... Genomics 105 (2), 83-89, 2015 | 270 | 2015 |
| Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data C Jia, Y Hu, D Kelly, J Kim, M Li, NR Zhang Nucleic Acids Research 45 (19), 10978-10988, 2017 | 72 | 2017 |
| LIQA: long-read isoform quantification and analysis Y Hu, L Fang, X Chen, JF Zhong, M Li, K Wang Genome biology 22 (1), 1-21, 2021 | 57 | 2021 |
| Transcriptome-wide analysis reveals modulation of human macrophage inflammatory phenotype through alternative splicing J Lin, Y Hu, S Nunez, AS Foulkes, B Cieply, C Xue, M Gerelus, W Li, ... Arteriosclerosis, thrombosis, and vascular biology 36 (7), 1434-1447, 2016 | 46 | 2016 |
| PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution Y Hu, Y Liu, X Mao, C Jia, JF Ferguson, C Xue, MP Reilly, H Li, M Li Nucleic acids research 42 (3), e20-e20, 2014 | 41 | 2014 |
| Adipose tissue RNASeq reveals novel gene–nutrient interactions following n-3 PUFA supplementation and evoked inflammation in humans JF Ferguson, C Xue, Y Hu, M Li, MP Reilly The Journal of nutritional biochemistry 30, 126-132, 2016 | 28 | 2016 |
| LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing Q Liu, Y Hu, A Stucky, L Fang, JF Zhong, K Wang BMC genomics 21 (11), 1-12, 2020 | 26 | 2020 |
| Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers Y Hu, K Wang, M Li PLOS Computational Biology 16 (6), e1007925, 2020 | 24 | 2020 |
| Mapping Splicing Quantitative Trait Loci in RNA-Seq: Supplement Issue: Array Platform Modeling and Analysis (A) C Jia, Y Hu, Y Liu, M Li Cancer informatics 13, CIN. S13971, 2014 | 21* | 2014 |
| Implications of error-prone long-read whole-genome shotgun sequencing on characterizing reference microbiomes Y Hu, L Fang, C Nicholson, K Wang iScience, 101223, 2020 | 14 | 2020 |
| PennDiff: detecting differential alternative splicing and transcription by RNA sequencing Y Hu, J Lin, J Hu, G Hu, K Wang, H Zhang, MP Reilly, M Li Bioinformatics 34 (14), 2384-2391, 2018 | 14 | 2018 |
| Exploring strategy selection in populations via a continuous evolutionary game dynamics S Tan, J Lü, Y Hu, MJ Ogorzalek 2014 IEEE International Symposium on Circuits and Systems (ISCAS), 2780-2783, 2014 | 2 | 2014 |
| Detecting differential alternative splicing events in scRNA-seq with or without UMIs Y Hu, K Wang, M Li bioRxiv, 738997, 2019 | 1 | 2019 |
| Statistical Methods for Alternative Splicing Using RNA Sequencing Y Hu University of Pennsylvania, 2018 | | 2018 |
