| Reinforcement learning based adaptive sampling: REAPing rewards by exploring protein conformational landscapes Z Shamsi, KJ Cheng, D Shukla The Journal of Physical Chemistry B 122 (35), 8386-8395, 2018 | 90 | 2018 |
| Universality of the sodium ion binding mechanism in class AG‐protein‐coupled receptors B Selvam, Z Shamsi, D Shukla Angewandte Chemie 130 (12), 3102-3107, 2018 | 50 | 2018 |
| Enhanced unbiased sampling of protein dynamics using evolutionary coupling information Z Shamsi, AS Moffett, D Shukla Scientific reports 7 (1), 12700, 2017 | 44 | 2017 |
| TLmutation: predicting the effects of mutations using transfer learning Z Shamsi, M Chan, D Shukla The Journal of Physical Chemistry B 124 (19), 3845-3854, 2020 | 22 | 2020 |
| Application of Hidden Markov Models in Biomolecular Simulations S Shukla, Z Shamsi, AS Moffett, B Selvam, D Shukla Methods in Molecular Biology, 2016 | 10 | 2016 |
| How does evolution design functional free energy landscapes of proteins? A case study on the emergence of regulation in the Cyclin Dependent Kinase family Z Shamsi, D Shukla Molecular Systems Design & Engineering 5 (1), 392-400, 2020 | 3 | 2020 |
| Automated Deep Aberration Detection from Chromosome Karyotype Images. Z Shamsi, D Bryant, J Wilson, X Qu, A Dubey, K Kothari, M Dehghani, ... URL: http://arxiv. org/abs/2211.14312, 2022 | 1 | 2022 |
| Publisher Correction: Enhanced unbiased sampling of protein dynamics using evolutionary coupling information Z Shamsi, AS Moffett, D Shukla Scientific Reports 7 (1), 18102, 2017 | 1 | 2017 |
| Controller Design for Processes with Unknown Dynamics and Input Nonlinearity with Applications to Bioreactors Z Shamsi, M Shahrokhi Industrial & Engineering Chemistry Research 55 (9), 2584-2593, 2016 | 1 | 2016 |
| NPSV-deep: a deep learning method for genotyping structural variants in short read genome sequencing data MD Linderman, J Wallace, A van der Heyde, E Wieman, D Brey, Y Shi, ... Bioinformatics 40 (3), btae129, 2024 | | 2024 |
| Structural variant evaluation through iterative genome construction LL Ali Bashir, Zahra Shamsi, Wesley Wei Qian, Tze Way Eugene Ie, Jeffrey ... US Patent US20240047010A1, 2024 | | 2024 |
| 42. Automated deep aberration detection from chromosome karyotype images M Fang, Z Shamsi, D Bryant, J Wilson, X Qu, A Dubey, K Kothari, ... Cancer Genetics 278, 13, 2023 | | 2023 |
| Billion-years old proteins show the importance of N-lobe orientation in Imatinib-kinase selectivity Z Shamsi, D Shukla arXiv preprint arXiv:2303.15586, 2023 | | 2023 |
| Karyotype AI for Precision Oncology Z Shamsi, D Bryant, J Wilson, X Qu, A Dubey, K Kothari, M Dehghani, ... arXiv preprint arXiv:2211.14312, 2022 | | 2022 |
| Evolution of protein structure function Z Shamsi University of Illinois at Urbana-Champaign, 2019 | | 2019 |
| Concestor kinase activation mechanism uncovers the cyclin dependence of CDK family kinases Z Shamsi, D Shukla bioRxiv, 410902, 2018 | | 2018 |
| Efficient Unbiased Sampling of Protein Dynamics using Reinforcement Learning Z Shamsi, D Shukla Biophysical Journal 114 (3), 673a, 2018 | | 2018 |
| Reconstructing Ancient Sequences to Understand the Structure and Function Relationships of Modern Proteins Z Shamsi, A Moffett, D Shukla 2017 AIChE Annual Meeting, 2017 | | 2017 |
| کنترل زیست توده در یک بیوراکتور به کمک شبکه عصبی تطبیقی زهرا شمسی - محمد شاهرخی 15th Iranian National Congress of Chemical Engineering, 2015 | | 2015 |
| Supplementary Information for: Enhanced unbiased sampling of protein dynamics using evolutionary coupling information Z Shamsi, AS Moffett, D Shukla | | |
Diwakar ShuklaAssociate Professor, University of Illinois at Urbana-ChampaignVerified email at illinois.edu
