| Metabolic reaction network-based recursive metabolite annotation for untargeted metabolomics X Shen, R Wang, X Xiong, Y Yin, Y Cai, Z Ma, N Liu, ZJ Zhu Nature communications 10 (1), 1516, 2019 | 234 | 2019 |
| Normalization and integration of large-scale metabolomics data using support vector regression X Shen, X Gong, Y Cai, Y Guo, J Tu, H Li, T Zhang, J Wang, F Xue, ZJ Zhu Metabolomics 12, 1-12, 2016 | 158 | 2016 |
| An integrated targeted metabolomic platform for high-throughput metabolite profiling and automated data processing Y Cai, K Weng, Y Guo, J Peng, ZJ Zhu Metabolomics 11, 1575-1586, 2015 | 131 | 2015 |
| SWATHtoMRM: development of high-coverage targeted metabolomics method using SWATH technology for biomarker discovery H Zha, Y Cai, Y Yin, Z Wang, K Li, ZJ Zhu Analytical Chemistry 90 (6), 4062-4070, 2018 | 110 | 2018 |
| Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila Z Ma, H Wang, Y Cai, H Wang, K Niu, X Wu, H Ma, Y Yang, W Tong, F Liu, ... Elife 7, e35368, 2018 | 104 | 2018 |
| MetDIA: targeted metabolite extraction of multiplexed MS/MS spectra generated by data-independent acquisition H Li, Y Cai, Y Guo, F Chen, ZJ Zhu Analytical chemistry 88 (17), 8757-8764, 2016 | 103 | 2016 |
| Kynurenic acid may underlie sex-specific immune responses to COVID-19 Y Cai, DJ Kim, T Takahashi, DI Broadhurst, H Yan, S Ma, NJW Rattray, ... Science Signaling 14 (690), eabf8483, 2021 | 64 | 2021 |
| Sex differences in colon cancer metabolism reveal a novel subphenotype Y Cai, NJW Rattray, Q Zhang, V Mironova, A Santos-Neto, KS Hsu, ... Scientific reports 10 (1), 4905, 2020 | 49 | 2020 |
| DecoMetDIA: deconvolution of multiplexed MS/MS spectra for metabolite identification in SWATH-MS-based untargeted metabolomics Y Yin, R Wang, Y Cai, Z Wang, ZJ Zhu Analytical chemistry 91 (18), 11897-11904, 2019 | 47 | 2019 |
| Metabolite annotation from knowns to unknowns through knowledge-guided multi-layer metabolic networking Z Zhou, M Luo, H Zhang, Y Yin, Y Cai, ZJ Zhu Nature Communications 13 (1), 6656, 2022 | 46 | 2022 |
| Normalizing untargeted periconceptional urinary metabolomics data: a comparison of approaches AK Rosen Vollmar, NJW Rattray, Y Cai, ÁJ Santos-Neto, NC Deziel, ... Metabolites 9 (10), 198, 2019 | 42 | 2019 |
| Ion mobility-based sterolomics reveals spatially and temporally distinctive sterol lipids in the mouse brain T Li, Y Yin, Z Zhou, J Qiu, W Liu, X Zhang, K He, Y Cai, ZJ Zhu Nature Communications 12 (1), 4343, 2021 | 39 | 2021 |
| Advanced analytical and informatic strategies for metabolite annotation in untargeted metabolomics Y Cai, Z Zhou, ZJ Zhu TrAC Trends in Analytical Chemistry 158, 116903, 2023 | 24 | 2023 |
| Kynurenic acid underlies sex-specific immune responses to COVID-19 Y Cai, DJ Kim, T Takahashi, DI Broadhurst, S Ma, NJW Rattray, ... MedRxiv, 2020 | 24 | 2020 |
| Molecular pathway analysis indicates a distinct metabolic phenotype in women with right-sided colon cancer Y Sun, V Mironova, Y Chen, EPF Lundh, Q Zhang, Y Cai, V Vasiliou, ... Translational oncology 13 (1), 42-56, 2020 | 21 | 2020 |
| Tumor tissue-specific biomarkers of colorectal cancer by anatomic location and stage Y Cai, NJW Rattray, Q Zhang, V Mironova, A Santos-Neto, E Muca, ... Metabolites 10 (6), 257, 2020 | 18 | 2020 |
| A high-throughput targeted metabolomics workflow for the detection of 200 polar metabolites in central carbon metabolism Y Cai, ZJ Zhu Microbial metabolomics: methods and protocols, 263-274, 2019 | 18 | 2019 |
| Global stable-isotope tracing metabolomics reveals system-wide metabolic alternations in aging Drosophila R Wang, Y Yin, J Li, H Wang, W Lv, Y Gao, T Wang, Y Zhong, Z Zhou, ... Nature communications 13 (1), 3518, 2022 | 15 | 2022 |
| Gene Alterations of N6-Methyladenosine (m6A) Regulators in Colorectal Cancer: A TCGA Database Study Q Zhang, Y Cai, V Kurbatov, SA Khan, L Lu, Y Zhang, CH Johnson BioMed Research International 2020, 2020 | 15 | 2020 |
| Analyzing metabolomics data for environmental health and exposome research Y Cai, AK Rosen Vollmar, CH Johnson Computational Methods and Data Analysis for Metabolomics, 447-467, 2020 | 15 | 2020 |
