Linked-read analysis identifies mutations in single-cell DNA-sequencing data CL Bohrson, AR Barton, MA Lodato, RE Rodin, LJ Luquette, ... Nature genetics 51 (4), 749-754, 2019 | 84 | 2019 |
Striking immune phenotypes in gene-targeted mice are driven by a copy-number variant originating from a commercially available C57BL/6 strain VS Mahajan, E Demissie, H Mattoo, V Viswanadham, A Varki, R Morris, ... Cell reports 15 (9), 1901-1909, 2016 | 80 | 2016 |
Comprehensive identification of transposable element insertions using multiple sequencing technologies C Chu, R Borges-Monroy, VV Viswanadham, S Lee, H Li, EA Lee, PJ Park Nature communications 12 (1), 3836, 2021 | 62 | 2021 |
Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability T Bae, L Fasching, Y Wang, JH Shin, M Suvakov, Y Jang, S Norton, ... Science 377 (6605), 511-517, 2022 | 35 | 2022 |
ERα-associated translocations underlie oncogene amplifications in breast cancer JJK Lee, YL Jung, TC Cheong, J Espejo Valle-Inclan, C Chu, DC Gulhan, ... Nature 618 (7967), 1024-1032, 2023 | 26 | 2023 |
B1a and B2 cells are characterized by distinct CpG modification states at DNMT3A-maintained enhancers VS Mahajan, H Mattoo, N Sun, V Viswanadham, GJ Yuen, ... Nature communications 12 (1), 2208, 2021 | 18 | 2021 |
DOCK2 sets the threshold for entry into the virtual memory CD8+ T cell compartment by negatively regulating tonic TCR triggering VS Mahajan, E Demissie, F Alsufyani, S Kumari, GJ Yuen, ... The Journal of Immunology 204 (1), 49-57, 2020 | 11 | 2020 |
Schizophrenia-associated somatic copy-number variants from 12,834 cases reveal recurrent NRXN1 and ABCB11 disruptions EA Maury, MA Sherman, G Genovese, TG Gilgenast, T Kamath, SJ Burris, ... Cell Genomics 3 (8), 2023 | 4 | 2023 |
A Bayesian approach for correcting Tn5 transposition bias in ATAC-seq footprinting VV Viswanadham, VS Mahajan, S Pillai bioRxiv, 525808, 2019 | 2 | 2019 |
Predicting response to immune checkpoint blockade therapy among mismatch repair-deficient patients using mutational signatures DC Gulhan, V Viswanadham, F Muyas, H Jin, MB Foote, JJK Lee, ... medRxiv, 2024.01. 19.24301236, 2024 | 1 | 2024 |
Decelluarization and reseeding of porcine colon with human CaCo-2 cells for whole-scale organ engineering applications J Haduong, R Nayak, Y Suh, V Viswanadham Berkeley Scientific Journal 19 (1), 2014 | 1 | 2014 |
Contrasting somatic mutation patterns in aging human neurons and oligodendrocytes J Ganz, LJ Luquette, S Bizzotto, MB Miller, Z Zhou, CL Bohrson, H Jin, ... Cell 187 (8), 1955-1970. e23, 2024 | | 2024 |
High-resolution detection of copy number alterations in single cells with HiScanner Y Zhao, LJ Luquette, AD Veit, X Wang, R Xi, VV Viswanadham, DD Shao, ... bioRxiv, 2024.04. 26.587806, 2024 | | 2024 |
Cell lineage analysis with somatic mutations reveals late divergence of neuronal cell types and cortical areas in human cerebral cortex SN Kim, VV Viswanadham, RN Doan, Y Dou, S Bizzotto, S Khoshkhoo, ... bioRxiv, 2023 | | 2023 |
Origins, patterns, and consequences of somatic mutations in engineered, normal, and diseased cells VV Viswanadham | | 2023 |
Polygenic risks scores for autoimmune related diseases are significantly different and skewed in cancer exceptional responders S Chen, ALM Tan, C Perry, S Churchill, M Vella, J Mao, V Viswanadham, ... medRxiv, 2023.02. 22.23285773, 2023 | | 2023 |
Network-based integration of epigenetic landscapes unveils molecular programs underlying human T follicular helper cell differentiation VS Mahajan, SA Rahman, VV Viswanadham, GJ Yuen, N Sun, H Mattoo, ... bioRxiv, 2021.05. 19.444859, 2021 | | 2021 |
Uncovering Epigenetic Control Elements in B-Cell Subset Development VV Viswanadham Harvard University, 2016 | | 2016 |