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David M. Needham
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Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples
AE Parada, DM Needham, JA Fuhrman
Environmental microbiology 18 (5), 1403-1414, 2016
28982016
Marine microbial community dynamics and their ecological interpretation
JA Fuhrman, JA Cram, DM Needham
Nature Reviews Microbiology 13 (3), 133-146, 2015
7292015
Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom
DM Needham, JA Fuhrman
Nature microbiology 1 (4), 1-7, 2016
3432016
Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
AE Zimmerman, C Howard-Varona, DM Needham, SG John, AZ Worden, ...
Nature Reviews Microbiology 18 (1), 21-34, 2020
2552020
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
JA Cram, CET Chow, R Sachdeva, DM Needham, AE Parada, JA Steele, ...
The ISME journal 9 (3), 563-580, 2015
2212015
Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters
DM Needham, R Sachdeva, JA Fuhrman
The ISME journal 11 (7), 1614-1629, 2017
1832017
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight
CET Chow, R Sachdeva, JA Cram, JA Steele, DM Needham, A Patel, ...
The ISME journal 7 (12), 2259-2273, 2013
1692013
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience
DM Needham, CET Chow, JA Cram, R Sachdeva, A Parada, JA Fuhrman
The ISME journal 7 (7), 1274-1285, 2013
1402013
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators
DM Needham, S Yoshizawa, T Hosaka, C Poirier, CJ Choi, ...
Proceedings of the National Academy of Sciences 116 (41), 20574-20583, 2019
1292019
High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome
W Zheng, S Zhao, Y Yin, H Zhang, DM Needham, ED Evans, CL Dai, ...
Science 376 (6597), eabm1483, 2022
1212022
Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes
JA Cram, LC Xia, DM Needham, R Sachdeva, F Sun, JA Fuhrman
The ISME journal 9 (12), 2573-2586, 2015
1102015
Short-term dynamics and interactions of marine protist communities during the spring–summer transition
L Berdjeb, A Parada, DM Needham, JA Fuhrman
The ISME journal 12 (8), 1907-1917, 2018
822018
Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling
DM Needham, EB Fichot, E Wang, L Berdjeb, JA Cram, CG Fichot, ...
The ISME journal 12 (10), 2417-2432, 2018
812018
Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes
ET Sieradzki, JC Ignacio-Espinoza, DM Needham, EB Fichot, JA Fuhrman
Nature communications 10 (1), 1169, 2019
762019
Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems
NA Ahlgren, Y Chen, DM Needham, AE Parada, R Sachdeva, V Trinh, ...
Environmental microbiology 19 (6), 2434-2452, 2017
682017
Taxon disappearance from microbiome analysis reinforces the value of mock communities as a standard in every sequencing run
YC Yeh, DM Needham, ET Sieradzki, JA Fuhrman
MSystems 3 (3), 10.1128/msystems. 00023-18, 2018
652018
EMP 16S Illumina amplicon protocol
JG Caporaso, G Ackermann, A Apprill, M Bauer, D Berg-Lyons, J Betley, ...
632018
Comprehensive single‐PCR 16S and 18S rRNA community analysis validated with mock communities, and estimation of sequencing bias against 18S
YC Yeh, JC McNichol, DM Needham, EB Fichot, L Berdjeb, JA Fuhrman
Environmental Microbiology, 2021
48*2021
Influence of light on particulate organic matter utilization by attached and free-living marine bacteria
L Gómez-Consarnau, DM Needham, PK Weber, JA Fuhrman, X Mayali
Frontiers in Microbiology 10, 451552, 2019
282019
Seasonal and geographical transitions in eukaryotic phytoplankton community structure in the Atlantic and Pacific Oceans
CJ Choi, V Jimenez, DM Needham, C Poirier, C Bachy, H Alexander, ...
Frontiers in Microbiology 11, 542372, 2020
242020
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Articles 1–20