| Long non-coding RNA in plants in the era of reference sequences H Budak, SB Kaya, HB Cagirici Frontiers in Plant Science 11, 441273, 2020 | 110 | 2020 |
| RNA sequencing and co-expressed long non-coding RNA in modern and wild wheats HB Cagirici, B Alptekin, H Budak Scientific reports 7 (1), 10670, 2017 | 74 | 2017 |
| GrainGenes: a data-rich repository for small grains genetics and genomics E Yao, VC Blake, L Cooper, CP Wight, S Michel, HB Cagirici, GR Lazo, ... Database 2022, baac034, 2022 | 34 | 2022 |
| Assembly and annotation of transcriptome provided evidence of miRNA mobility between wheat and wheat stem sawfly HB Cagirici, S Biyiklioglu, H Budak Frontiers in plant science 8, 282490, 2017 | 25 | 2017 |
| Genome-wide discovery of G-quadruplexes in wheat: distribution and putative functional roles HB Cagirici, TZ Sen G3: Genes, Genomes, Genetics 10 (6), 2021-2032, 2020 | 23 | 2020 |
| Genome-wide discovery of G-quadruplexes in barley HB Cagirici, H Budak, TZ Sen Scientific Reports 11 (1), 7876, 2021 | 17 | 2021 |
| LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants HB Cagirici, S Galvez, TZ Sen, H Budak Functional & Integrative Genomics 21 (2), 195-204, 2021 | 16 | 2021 |
| Capturing wheat phenotypes at the genome level B Hussain, BA Akpınar, M Alaux, AM Algharib, D Sehgal, Z Ali, GI Aradottir, ... Frontiers in Plant Science 13, 851079, 2022 | 14 | 2022 |
| G4Boost: a machine learning-based tool for quadruplex identification and stability prediction HB Cagirici, H Budak, TZ Sen BMC bioinformatics 23 (1), 240, 2022 | 11 | 2022 |
| mirMachine: a one-stop shop for plant miRNA annotation HB Cagirici, TZ Sen, H Budak JoVE (Journal of Visualized Experiments), e62430, 2021 | 9 | 2021 |
| Wheat genomics and breeding: bridging the gap B Hussain, BA Akpınar, M Alaux, AM Algharib, D Sehgal, Z Ali, R Appels, ... CABI, 2021 | 6 | 2021 |
| Leveling the playing field in homozygosity mapping using map distances Y Li, HB Cagirici, S Horpaopan, J Ott, A Imai, J Majewski, M Lathrop Annals of Human Genetics 79 (5), 366-372, 2015 | 3 | 2015 |
| Global and cell type-specific immunological hallmarks of severe dengue progression identified via a systems immunology approach L Ghita, Z Yao, Y Xie, V Duran, HB Cagirici, J Samir, I Osman, ... Nature Immunology 24 (12), 2150-2163, 2023 | 2 | 2023 |
| Multiple variant calling pipelines in wheat whole exome sequencing HB Cagirici, BA Akpinar, TZ Sen, H Budak International Journal of Molecular Sciences 22 (19), 10400, 2021 | 2 | 2021 |
| Co-expression pan-network reveals genes involved in complex traits within maize pan-genome HB Cagirici, CM Andorf, TZ Sen BMC Plant Biology 22 (1), 595, 2022 | 1 | 2022 |
| Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits E Poretsky, HB Cagirici, CM Andorf, TZ Sen G3: Genes, Genomes, Genetics, jkae059, 2024 | | 2024 |
| Machine Learning for Plant Noncoding RNA Annotation HB Cagirici PAG Australia 2023, 2023 | | 2023 |
Hikmet BudakArizona Western CollegeVerified email at unl.edu
