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Byron J. Smith
Byron J. Smith
Bioinformatics Fellow, The Gladstone Institutes
Verified email at gladstone.ucsf.edu - Homepage
Title
Cited by
Cited by
Year
rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
SF Stoddard, BJ Smith, R Hein, BRK Roller, TM Schmidt
Nucleic acids research 43 (D1), D593-D598, 2015
8952015
Changes in the gut microbiome and fermentation products concurrent with enhanced longevity in acarbose-treated mice
BJ Smith, RA Miller, AC Ericsson, DC Harrison, R Strong, TM Schmidt
BMC Microbiology 19 (130), 1-16, 2019
2432019
Muribaculaceae genomes assembled from metagenomes suggest genetic drivers of differential response to acarbose treatment in mice
BJ Smith, RA Miller, TM Schmidt
mSphere 6 (6), 2021
642021
Strain-resolved analysis in a randomized trial of antibiotic pretreatment and maintenance dose delivery mode with fecal microbiota transplant for ulcerative colitis
BJ Smith, Y Piceno, M Zydek, B Zhang, LA Syriani, JP Terdiman, ...
Scientific Reports 12 (1), 1-14, 2022
202022
Scalable microbial strain inference in metagenomic data using StrainFacts
BJ Smith, X Li, ZJ Shi, A Abate, KS Pollard
Frontiers in Bioinformatics 2 (867386), 2022
52022
36 ANTIBIOTIC PRETREATMENT PRIOR TO FECAL MICROBIOTA TRANSPLANTATION INCREASES RATES OF REMISSION IN PATIENTS WITH MILD TO MODERATE ULCERATIVE COLITIS: RESULTS FROM A PILOT …
N El-Nachef, B Smith, Y Piceno, M Zydek, L Syriani, JP Terdiman, A Ma, ...
Gastroenterology 158 (6), S-14, 2020
22020
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
BJ Smith, C Zhao, V Dubinkina, X Jin, J Moltzau-Anderson, K Pollard
bioRxiv, 2024.04. 10.588779, 2024
2024
Exclusive enteral nutrition initiates protective microbiome changes to induce remission in pediatric Crohn's disease
D Haecker, K Siebert, BJ Smith, N Koehler, H Heimes, A Metwaly, ...
MedRxiv, 2023
2023
Genotyping Microbial Communities with MIDAS2: From Metagenomic Reads to Allele Tables
C Zhao, M Goldman, BJ Smith, KS Pollard
Current Protocols, 2022
2022
Evaluation of Le et al.: Challenges and opportunities for using data to understand equitability in science
BJ Smith, KS Pollard
Cell Systems 12 (9), 839-841, 2021
2021
Integrated Analysis of the Gut Microbiota and Their Fermentation Products in Mice Treated with the Longevity Enhancing Drug Acarbose
BJ Smith
2019
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Articles 1–11