| Gut-microbiota-targeted diets modulate human immune status HC Wastyk, GK Fragiadakis, D Perelman, D Dahan, BD Merrill, ... Cell 184 (16), 4137-4153. e14, 2021 | 620 | 2021 |
| Single-cell transcriptional diversity is a hallmark of developmental potential GS Gulati, SS Sikandar, DJ Wesche, A Manjunath, A Bharadwaj, ... Science 367 (6476), 405-411, 2020 | 569 | 2020 |
| A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021 | 561 | 2021 |
| Recovery of the gut microbiota after antibiotics depends on host diet, community context, and environmental reservoirs KM Ng, A Aranda-Díaz, C Tropini, MR Frankel, W Van Treuren, ... Cell host & microbe 26 (5), 650-665. e4, 2019 | 195 | 2019 |
| Hydrogenotrophic methanogenesis in archaeal phylum Verstraetearchaeota reveals the shared ancestry of all methanogens BA Berghuis, FB Yu, F Schulz, PC Blainey, T Woyke, SR Quake Proceedings of the National Academy of Sciences 116 (11), 5037-5044, 2019 | 178 | 2019 |
| Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress AP Gasch, FB Yu, J Hose, LE Escalante, M Place, R Bacher, J Kanbar, ... PLoS biology 15 (12), e2004050, 2017 | 123 | 2017 |
| Evidence for the prepattern/cooption model of vertebrate jaw evolution R Cerny, M Cattell, T Sauka-Spengler, M Bronner-Fraser, F Yu, ... Proceedings of the National Academy of Sciences 107 (40), 17262-17267, 2010 | 123 | 2010 |
| Hidden diversity of soil giant viruses F Schulz, L Alteio, D Goudeau, EM Ryan, FB Yu, RR Malmstrom, ... Nature communications 9 (1), 4881, 2018 | 122 | 2018 |
| Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome KN Lam, P Spanogiannopoulos, P Soto-Perez, M Alexander, MJ Nalley, ... Cell Reports 37 (5), 2021 | 91 | 2021 |
| Design, construction, and in vivo augmentation of a complex gut microbiome AG Cheng, PY Ho, A Aranda-Díaz, S Jain, BY Feiqiao, X Meng, M Wang, ... Cell 185 (19), 3617-3636. e19, 2022 | 90 | 2022 |
| Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples FB Yu, PC Blainey, F Schulz, T Woyke, MA Horowitz, SR Quake Elife 6, e26580, 2017 | 82 | 2017 |
| Testing of flow-based microfluidic biochips: Fault modeling, test generation, and experimental demonstration K Hu, F Yu, TY Ho, K Chakrabarty IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2014 | 82 | 2014 |
| Robust variation in infant gut microbiome assembly across a spectrum of lifestyles MR Olm, D Dahan, MM Carter, BD Merrill, FB Yu, S Jain, X Meng, ... Science 376 (6598), 1220-1223, 2022 | 72 | 2022 |
| Establishment and characterization of stable, diverse, fecal-derived in vitro microbial communities that model the intestinal microbiota A Aranda-Díaz, KM Ng, T Thomsen, I Real-Ramírez, D Dahan, S Dittmar, ... Cell host & microbe 30 (2), 260-272. e5, 2022 | 58 | 2022 |
| Long-term microfluidic tracking of coccoid cyanobacterial cells reveals robust control of division timing FB Yu, L Willis, RMW Chau, A Zambon, M Horowitz, D Bhaya, KC Huang, ... BMC biology 15, 1-14, 2017 | 52 | 2017 |
| A genomic toolkit for the mechanistic dissection of intractable human gut bacteria JE Bisanz, P Soto-Perez, C Noecker, AA Aksenov, KN Lam, GE Kenney, ... Cell host & microbe 27 (6), 1001-1013. e9, 2020 | 46 | 2020 |
| Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes MM Carter, MR Olm, BD Merrill, D Dahan, S Tripathi, SP Spencer, ... Cell 186 (14), 3111-3124. e13, 2023 | 40 | 2023 |
| Device for digital communication through capacitive coupling L Tan, JA Harley, FB Yu US Patent 9,652,090, 2017 | 40 | 2017 |
| Microfluidic serial digital to analog pressure converter for arbitrary pressure generation and contamination-free flow control F Yu, MA Horowitz, SR Quake Lab on a Chip 13 (10), 1911-1918, 2013 | 33 | 2013 |
| Quantifying rapid bacterial evolution and transmission within the mouse intestine KS Vasquez, L Willis, NJ Cira, KM Ng, MF Pedro, A Aranda-Díaz, ... Cell host & microbe 29 (9), 1454-1468. e4, 2021 | 29 | 2021 |
