Follow
Chunyu Zhao
Chunyu Zhao
Senior Bioinformatics Scientist, Lab of Katie Pollard, Chan Zuckerber Biohub
Verified email at czbiohub.org - Homepage
Title
Cited by
Cited by
Year
Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy
P Fozouni, S Son, MD de León Derby, GJ Knott, CN Gray, MV D’Ambrosio, ...
Cell 184 (2), 323-333. e9, 2021
6802021
Optimizing methods and dodging pitfalls in microbiome research
D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke, A Lauder, ...
Microbiome 5, 1-14, 2017
5082017
The stepwise assembly of the neonatal virome is modulated by breastfeeding
G Liang, C Zhao, H Zhang, L Mattei, S Sherrill-Mix, K Bittinger, LR Kessler, ...
Nature 581 (7809), 470-474, 2020
2102020
The gut microbiome regulates the increases in depressive-type behaviors and in inflammatory processes in the ventral hippocampus of stress vulnerable rats
J Pearson-Leary, C Zhao, K Bittinger, D Eacret, S Luz, AS Vigderman, ...
Molecular psychiatry 25 (5), 1068-1079, 2020
1582020
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments
EL Clarke, LJ Taylor, C Zhao, A Connell, JJ Lee, B Fett, FD Bushman, ...
Microbiome 7 (1), 46, 2019
1572019
Accelerated RNA detection using tandem CRISPR nucleases
TY Liu, GJ Knott, DCJ Smock, JJ Desmarais, S Son, A Bhuiya, ...
Nature chemical biology 17 (9), 982-988, 2021
1512021
Segmented filamentous bacteria prevent and cure rotavirus infection
Z Shi, J Zou, Z Zhang, X Zhao, J Noriega, B Zhang, C Zhao, H Ingle, ...
Cell 179 (3), 644-658. e13, 2019
1202019
FXR-dependent modulation of the human small intestinal microbiome by the bile acid derivative obeticholic acid
ES Friedman, Y Li, TCD Shen, J Jiang, L Chau, L Adorini, F Babakhani, ...
Gastroenterology 155 (6), 1741-1752. e5, 2018
1192018
Cervicovaginal fungi and bacteria associated with cervical intraepithelial neoplasia and high-risk human papillomavirus infections in a hispanic population
F Godoy-Vitorino, J Romaguera, C Zhao, D Vargas-Robles, ...
Frontiers in microbiology 9, 395352, 2018
992018
Bacterial colonization reprograms the neonatal gut metabolome
K Bittinger, C Zhao, Y Li, E Ford, ES Friedman, J Ni, CV Kulkarni, J Cai, ...
Nature microbiology 5 (6), 838-847, 2020
832020
Multi-omic analysis of the interaction between Clostridioides difficile infection and pediatric inflammatory bowel disease
FD Bushman, M Conrad, Y Ren, C Zhao, C Gu, C Petucci, MS Kim, ...
Cell host & microbe 28 (3), 422-433. e7, 2020
492020
Association of enterovirus D68 with acute flaccid myelitis, Philadelphia, Pennsylvania, USA, 2009–2018
P Uprety, D Curtis, M Elkan, J Fink, R Rajagopalan, C Zhao, K Bittinger, ...
Emerging infectious diseases 25 (9), 1676, 2019
482019
Characterisation of the nasal microbiota in granulomatosis with polyangiitis
RL Rhee, AG Sreih, CE Najem, PC Grayson, C Zhao, K Bittinger, ...
Annals of the rheumatic diseases 77 (10), 1448-1453, 2018
452018
An automatic ocular artifacts removal method based on wavelet-enhanced canonical correlation analysis
C Zhao, T Qiu
2011 Annual International Conference of the IEEE Engineering in Medicine and …, 2011
312011
Fast and accurate metagenotyping of the human gut microbiome with GT-Pro
ZJ Shi, B Dimitrov, C Zhao, S Nayfach, KS Pollard
Nature biotechnology 40 (4), 507-516, 2022
232022
MIDAS2: Metagenomic intra-species diversity analysis system
C Zhao, B Dimitrov, M Goldman, S Nayfach, KS Pollard
Bioinformatics 39 (1), btac713, 2023
132023
UniAlign: protein structure alignment meets evolution
C Zhao, A Sacan
Bioinformatics 31 (19), 3139-3146, 2015
112015
Pitfalls of genotyping microbial communities with rapidly growing genome collections
C Zhao, ZJ Shi, KS Pollard
Cell Systems 14 (2), 160-176. e3, 2023
92023
The macronutrient composition of infant formula produces differences in gut microbiota maturation that associate with weight gain velocity and weight status
JA Mennella, Y Li, K Bittinger, ES Friedman, C Zhao, H Li, GD Wu, ...
Nutrients 14 (6), 1241, 2022
92022
Prediction of HIV-1 and human protein interactions based on a novel evolution-aware structure alignment method
C Zhao, A Sacan
Proceedings of the International Conference on Bioinformatics …, 2013
82013
The system can't perform the operation now. Try again later.
Articles 1–20