| Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis H Liu, TG Stephens, RA González-Pech, VH Beltran, B Lapeyre, ... Communications biology 1 (1), 95, 2018 | 186 | 2018 |
| Analysis of the Draft Genome of the Red Seaweed Gracilariopsis chorda Provides Insights into Genome Size Evolution in Rhodophyta JM Lee, EC Yang, L Graf, JH Yang, H Qiu, U Zelzion, CX Chan, ... Molecular biology and evolution 35 (8), 1869-1886, 2018 | 89 | 2018 |
| Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium RA González-Pech, TG Stephens, Y Chen, AR Mohamed, Y Cheng, ... BMC biology 19, 1-22, 2021 | 76 | 2021 |
| Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions TG Stephens, RA González-Pech, Y Cheng, AR Mohamed, DW Burt, ... BMC biology 18, 1-21, 2020 | 72 | 2020 |
| Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions TG Stephens, MA Ragan, D Bhattacharya, CX Chan Scientific reports 8 (1), 17175, 2018 | 47 | 2018 |
| Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes Y Chen, RA González‐Pech, TG Stephens, D Bhattacharya, CX Chan Journal of phycology 56 (1), 6-10, 2020 | 40 | 2020 |
| Building consensus around the assessment and interpretation of Symbiodiniaceae diversity SW Davies, MH Gamache, LI Howe-Kerr, NG Kriefall, AC Baker, ... PeerJ 11, e15023, 2023 | 33 | 2023 |
| Commonly misunderstood parameters of NCBI BLAST and important considerations for users RA González-Pech, TG Stephens, CX Chan Bioinformatics 35 (15), 2697-2698, 2019 | 30 | 2019 |
| Amoeba genome reveals dominant host contribution to plastid endosymbiosis D Lhee, JM Lee, K Ettahi, CH Cho, JS Ha, YF Chan, U Zelzion, ... Molecular biology and evolution 38 (2), 344-357, 2021 | 27 | 2021 |
| Why is primary endosymbiosis so rare? TG Stephens, A Gabr, V Calatrava, AR Grossman, D Bhattacharya New Phytologist 231 (5), 1693-1699, 2021 | 21 | 2021 |
| Comparative Genomics Supports That Brazilian Bioethanol Saccharomyces cerevisiae Comprise a Unified Group of Domesticated Strains Related to Cachaça … AP Jacobus, TG Stephens, P Youssef, R González-Pech, ... Frontiers in microbiology 12, 644089, 2021 | 21 | 2021 |
| Multi-omic characterization of the thermal stress phenome in the stony coral Montipora capitata A Williams, JS Pathmanathan, TG Stephens, X Su, EN Chiles, D Conetta, ... PeerJ 9, e12335, 2021 | 17 | 2021 |
| PhySortR: a fast, flexible tool for sorting phylogenetic trees in R TG Stephens, D Bhattacharya, MA Ragan, CX Chan PeerJ 4, e2038, 2016 | 17 | 2016 |
| Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts KE Dougan, RA González-Pech, TG Stephens, S Shah, Y Chen, ... Trends in Microbiology 30 (9), 831-840, 2022 | 16 | 2022 |
| Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Communications Biology, 1 (1), 95 H Liu, TG Stephens, RA González-Pech, VH Beltran, B Lapeyre, ... | 15 | 2018 |
| Ploidy variation and its implications for reproduction and population dynamics in two sympatric Hawaiian coral species TG Stephens, EL Strand, HM Putnam, D Bhattacharya Genome biology and evolution 15 (8), evad149, 2023 | 14 | 2023 |
| High-quality genome assemblies from key Hawaiian coral species TG Stephens, JM Lee, YJ Jeong, HS Yoon, HM Putnam, E Majerová, ... GigaScience 11, giac098, 2022 | 10 | 2022 |
| Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Commun Biol. 2018; 1: 95 H Liu, TG Stephens, RA González-Pech, VH Beltran, B Lapeyre, ... Frontiers in microbiology 9, 228, 2018 | 9 | 2018 |
| Loss of key endosymbiont genes may facilitate early host control of the chromatophore in Paulinella A Gabr, TG Stephens, D Bhattacharya Iscience 25 (9), 2022 | 6 | 2022 |
| Development of a portable toolkit to diagnose coral thermal stress Z Meng, A Williams, P Liau, TG Stephens, C Drury, EN Chiles, X Su, ... Scientific reports 12 (1), 14398, 2022 | 5 | 2022 |
