Systematic pan-cancer analysis of somatic allele frequency L Spurr, M Li, N Alomran, Q Zhang, P Restrepo, M Movassagh, C Trenkov, ... Scientific reports 8 (1), 7735, 2018 | 23 | 2018 |
Estimating the allele-specific expression of snvs from 10× genomics single-cell rna-sequencing data P NM, H Liu, P Bousounis, L Spurr, N Alomran, H Ibeawuchi, J Sein, ... Genes 11 (3), 240, 2020 | 21 | 2020 |
RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data M Movassagh, N Alomran, P Mudvari, M Dede, C Dede, K Kowsari, ... Nucleic acids research 44 (22), e161-e161, 2016 | 16 | 2016 |
scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets H Liu, NM Prashant, LF Spurr, P Bousounis, N Alomran, H Ibeawuchi, ... BMC genomics 22, 1-16, 2021 | 15 | 2021 |
SCReadCounts: estimation of cell-level SNVs expression from scRNA-seq data NM Prashant, N Alomran, Y Chen, H Liu, P Bousounis, M Movassagh, ... BMC genomics 22, 1-9, 2021 | 13 | 2021 |
ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data LF Spurr, N Alomran, P Bousounis, D Reece-Stremtan, NM Prashant, ... Bioinformatics 36 (5), 1351-1359, 2020 | 12 | 2020 |
Overexpressed somatic alleles are enriched in functional elements in Breast Cancer P Restrepo, M Movassagh, N Alomran, C Miller, M Li, C Trenkov, ... Scientific Reports 7 (1), 8287, 2017 | 4 | 2017 |
SCReadCounts: Estimation of cell-level SNVs from scRNA-seq data NM Prashant, N Alomran, Y Chen, H Liu, P Bousounis, M Movassagh, ... bioRxiv, 2020.11. 23.394569, 2020 | 3 | 2020 |
GeTallele: A Method for Analysis of DNA and RNA Allele Frequency Distributions P Słowiński, M Li, P Restrepo, N Alomran, LF Spurr, C Miller, ... Frontiers in bioengineering and biotechnology 8, 1021, 2020 | 3 | 2020 |
RsQTL: correlation of expressed SNVs with splicing using RNA-sequencing data J Sein, LF Spurr, P Bousounis, NM Prashant, H Liu, N Alomran, J Bernot, ... bioRxiv, 840504, 2019 | 2 | 2019 |
GeTallele: a method for integrative analysis and visualization of DNA and RNA allele frequencies P Słowiński, M Li, P Restrepo, N Alomran, LF Spurr, C Miller, ... bioRxiv, 491209, 2018 | 1 | 2018 |
Let us know how access to this document benefits you. W Li JMIR 7 (3), e14830, 2019 | | 2019 |
ReQTL–an allele-level measure of variation-expression genomic relationships L Spurr, N Alomran, P Słowiński, M Li, P Bousounis, Q Zhang, J Sein, ... bioRxiv, 464206, 2018 | | 2018 |
ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing L Spurr, N Alomran, P Bousounis Bioinformatics, 0 | | |
SCReadCounts: Estimation of cell-level SNVs from scRNA-seq data P NM, N Alomran, Y Chen, H Liu, P Bousounis, M Movassagh, N Edwards, ... | | |